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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:373.6 nTPM
HPA:373.6 nTPM
GTEx:400.7 nTPM
FANTOM5:1332.0 Scaled Tags Per Million
Pig:883.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 373.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 373.6
1981 Female, age 72, midline 429.5
2048 Male, age 55, midline 401.8
2565 Male, age 75, midline 377.6
2194 Female, age 79, both hemispheres 336.6
2816 Male, age 47, midline 322.3
Cervical spinal cord, dorsal horn
nTPM: 363.5
2296 Male, age 66, both hemispheres 439.3
2173 Female, age 72, unknown 421.0
2069 Male, age 47, both hemispheres 366.2
1877 Male, age 55, unknown 355.9
2297 Male, age 75, both hemispheres 300.6
2721 Male, age 90, both hemispheres 297.8
Cervical spinal cord, ventral horn
nTPM: 313.9
2809 Male, age 90, both hemispheres 368.2
2098 Female, age 72, unknown 346.6
2068 Male, age 55, unknown 325.2
2295 Male, age 66, both hemispheres 299.1
2820 Female, age 79, both hemispheres 272.2
2480 Male, age 75, both hemispheres 271.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 400.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 400.7
Samples: 159

Max nTPM: 561.9
Min nTPM: 237.8
Std nTPM: 70.4
Median nTPM: 396.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 561.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 559.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 541.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 532.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 532.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 524.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 521.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 516.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 515.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 512.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 511.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 508.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 508.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 505.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 503.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 502.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 501.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 499.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 495.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 494.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 493.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 490.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 487.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 483.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 474.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 471.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 469.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 469.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 467.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 464.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 462.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 459.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 458.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 454.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 454.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 453.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 452.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 451.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 450.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 450.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 447.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 447.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 445.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 444.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 441.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 441.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 440.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 440.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 439.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 438.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 437.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 436.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 435.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 433.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 430.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 429.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 428.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 427.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 427.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 426.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 425.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 425.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 423.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 416.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 415.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 415.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 413.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 412.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 411.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 408.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 408.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 408.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 406.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 406.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 405.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 403.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 397.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 396.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 396.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 396.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 395.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 394.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 391.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 391.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 391.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 390.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 390.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 389.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 389.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 389.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 388.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 387.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 386.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 384.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 383.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 382.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 381.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 381.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 380.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 380.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 379.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 378.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 376.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 376.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 375.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 375.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 374.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 374.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 371.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 371.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 370.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 367.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 361.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 361.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 358.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 357.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 354.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 354.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 353.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 352.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 351.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 344.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 342.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 341.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 341.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 340.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 338.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 336.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 336.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 336.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 325.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 324.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 323.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 322.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 321.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 319.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 318.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 317.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 314.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 310.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 308.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 300.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 296.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 293.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 293.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 292.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 292.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 291.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 290.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 290.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 288.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 287.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 284.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 282.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 275.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 270.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 265.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 264.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 237.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1332.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1332.0
FF:10181-103D1 60 years, female 1340.5
FF:10159-103A6 76 years, female 1323.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 883.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 856.2
Samples: 4

Max nTPM: 966.4
Min nTPM: 667.0
Sample A Female 667.0
Sample B Female 966.4
Sample C Male 955.7
Sample D Male 835.8
Ventral spinal cord
nTPM: 883.4
Samples: 4

Max nTPM: 1004.1
Min nTPM: 787.5
Sample A Female 787.5
Sample B Female 932.0
Sample C Male 809.8
Sample D Male 1004.1

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The Human Protein Atlas project is funded
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