MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:66.0 nTPM
HPA:66.0 nTPM
GTEx:45.1 nTPM
FANTOM5:45.1 Scaled Tags Per Million
Pig:46.8 nTPM
Mouse:62.6 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 66.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.1
1827 Male, age 72, unknown 53.0
2586 Male, age 75, left hemisphere 51.4
2828 Female, age 72, unknown 49.1
2219 Male, age 76, both hemispheres 45.2
2411 Female, age 72, unknown 43.6
1870 Female, age 42, unknown 42.2
1833 Male, age 53, unknown 40.1
1830 Male, age 51, unknown 29.6
2666 Male, age 74, left hemisphere 28.7
2019 Male, age 18, unknown 18.3
Dorsal raphe nucleus
nTPM: 65.7
2298 Female, age 72, unknown 92.7
2047 Male, age 72, unknown 79.9
1828 Male, age 53, unknown 60.0
2016 Female, age 72, unknown 54.5
2750 Male, age 76, both hemispheres 41.6
Inferior colliculus
nTPM: 66.0
2097 Female, age 72, unknown 71.2
1848 Female, age 42, unknown 69.1
1890 Male, age 53, unknown 62.6
2849 Male, age 72, unknown 61.0
Median raphe nucleus
nTPM: 35.8
2220 Male, age 76, midline 35.8
Pedunculopontine tegmental nucleus
nTPM: 46.2
1921 Female, age 85, both hemispheres 68.6
2334 Male, age 80, both hemispheres 42.2
2338 Male, age 61, both hemispheres 27.7
Periaquaductal grey, anterior
nTPM: 51.2
1947 Male, age 18, unknown 56.0
1795 Male, age 51, unknown 52.2
2502 Female, age 75, unknown 45.3
Periaquaductal grey, dorsal
nTPM: 58.8
1840 Male, age 53, unknown 89.8
2464 Female, age 72, unknown 64.3
2850 Male, age 76, both hemispheres 43.4
1831 Male, age 72, unknown 37.6
Periaquaductal grey, lateral
nTPM: 48.1
2053 Male, age 18, unknown 66.5
2140 Male, age 76, both hemispheres 46.4
2272 Male, age 74, both hemispheres 31.3
Pretectal area
nTPM: 49.1
2224 Female, age 72, unknown 67.6
1944 Female, age 72, unknown 61.4
1816 Male, age 51, unknown 61.3
2825 Male, age 18, unknown 58.4
2667 Female, age 75, unknown 56.1
2273 Male, age 74, both hemispheres 52.1
1817 Female, age 42, unknown 51.1
1815 Male, age 53, unknown 35.9
2316 Male, age 76, right hemisphere 35.4
2007 Male, age 72, unknown 34.5
2407 Male, age 75, both hemispheres 25.8
Red nucleus
nTPM: 36.8
2725 Female, age 75, unknown 49.6
1821 Female, age 72, unknown 45.8
2503 Female, age 72, unknown 45.1
1954 Female, age 42, unknown 44.0
2227 Male, age 72, unknown 43.3
2769 Male, age 72, unknown 41.4
1904 Male, age 53, unknown 38.1
2823 Male, age 76, right hemisphere 37.9
1865 Male, age 51, unknown 30.2
2588 Male, age 74, left hemisphere 26.0
2584 Male, age 75, left hemisphere 22.0
2785 Male, age 18, unknown 18.9
Substantia nigra
nTPM: 53.9
1916 Female, age 42, unknown 76.2
2699 Male, age 18, unknown 72.5
2409 Female, age 72, unknown 60.5
1889 Female, age 72, unknown 58.8
2241 Male, age 72, unknown 52.8
1851 Male, age 51, unknown 49.4
2590 Female, age 75, unknown 46.5
2665 Male, age 74, both hemispheres 44.6
2583 Male, age 75, right hemisphere 42.7
1941 Male, age 53, unknown 35.5
Superior colliculus
nTPM: 42.0
2087 Female, age 72, unknown 58.9
2261 Male, age 18, unknown 56.7
1796 Male, age 53, unknown 51.7
1839 Male, age 51, unknown 44.8
1895 Male, age 76, right hemisphere 41.7
1995 Male, age 72, unknown 35.5
2587 Male, age 74, left hemisphere 33.6
2664 Male, age 75, both hemispheres 33.2
1913 Female, age 42, unknown 32.6
2668 Female, age 75, unknown 31.2
Ventral tegmental area
nTPM: 45.5
2410 Female, age 72, unknown 56.5
1915 Female, age 42, unknown 53.7
1942 Male, age 51, unknown 48.9
2218 Male, age 76, both hemispheres 47.2
2021 Male, age 53, unknown 41.4
2223 Female, age 72, unknown 25.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.1
Samples: 139

Max nTPM: 235.2
Min nTPM: 2.9
Std nTPM: 35.2
Median nTPM: 35.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 235.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 172.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 168.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 139.1
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 129.2
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 116.0
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 111.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 109.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 92.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 91.9
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 89.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.1
FF:10158-103A5 76 years, female 45.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 46.8
Pig sample Sample description nTPM
Midbrain
nTPM: 44.3
Samples: 4

Max nTPM: 80.4
Min nTPM: 28.4
Sample A Female 80.4
Sample B Female 35.1
Sample C Male 28.4
Sample D Male 33.1
Periaqueductal gray
nTPM: 46.8
Samples: 3

Max nTPM: 56.7
Min nTPM: 39.6
Sample B Female 44.0
Sample C Male 56.7
Sample D Male 39.6
Substantia nigra
nTPM: 42.9
Samples: 4

Max nTPM: 60.2
Min nTPM: 32.2
Sample A Female 60.2
Sample B Female 32.2
Sample C Male 46.3
Sample D Male 33.0
Superior colliculi
nTPM: 33.3
Samples: 4

Max nTPM: 45.4
Min nTPM: 24.1
Sample A Female 45.4
Sample B Female 38.8
Sample C Male 24.1
Sample D Male 24.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 62.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 62.6
Samples: 4

Max nTPM: 66.9
Min nTPM: 57.1
Sample A Male 66.5
Sample B Male 66.9
Sample C Female 57.1
Sample D Female 60.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
70431307 Antisense, RP_050614_02_E11, Mouse strain C57BL/6J (56 days, male) 0.4
74750017 Antisense, RP_060220_05_E07, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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