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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:82.0 nTPM
HPA:82.0 nTPM
GTEx:166.4 nTPM
FANTOM5:392.6 Scaled Tags Per Million
Pig:133.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 82.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 61.3
2048 Male, age 55, midline 71.5
2816 Male, age 47, midline 68.5
1981 Female, age 72, midline 63.8
2194 Female, age 79, both hemispheres 59.1
2565 Male, age 75, midline 43.6
Cervical spinal cord, dorsal horn
nTPM: 82.0
2296 Male, age 66, both hemispheres 189.7
2173 Female, age 72, unknown 103.9
2069 Male, age 47, both hemispheres 82.6
1877 Male, age 55, unknown 57.2
2297 Male, age 75, both hemispheres 30.1
2721 Male, age 90, both hemispheres 28.4
Cervical spinal cord, ventral horn
nTPM: 78.5
2480 Male, age 75, both hemispheres 91.0
2068 Male, age 55, unknown 89.3
2098 Female, age 72, unknown 80.5
2820 Female, age 79, both hemispheres 72.3
2809 Male, age 90, both hemispheres 71.4
2295 Male, age 66, both hemispheres 66.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 166.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 166.4
Samples: 159

Max nTPM: 404.9
Min nTPM: 27.1
Std nTPM: 69.3
Median nTPM: 155.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 404.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 381.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 362.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 314.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 307.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 307.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 304.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 283.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 266.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 266.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 265.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 260.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 257.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 257.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 256.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 252.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 250.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 246.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 246.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 246.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 246.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 246.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 245.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 245.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 241.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 237.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 236.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 234.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 234.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 232.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 227.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 224.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 224.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 221.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 219.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 217.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 216.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 215.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 210.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 209.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 208.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 208.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 207.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 207.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 204.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 203.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 203.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 202.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 201.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 200.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 198.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 197.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 195.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 194.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 193.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 193.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 190.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 188.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 188.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 185.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 182.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 182.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 181.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 180.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 174.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 173.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 172.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 172.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 166.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 164.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 164.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 163.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 163.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 161.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 161.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 161.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 160.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 156.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 156.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 155.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 153.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 152.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 151.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 151.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 150.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 150.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 149.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 149.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 148.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 145.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 145.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 145.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 144.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 144.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 144.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 143.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 143.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 143.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 140.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 139.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 139.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 139.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 136.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 135.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 133.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 133.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 132.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 131.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 130.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 130.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 130.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 128.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 128.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 125.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 123.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 123.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 121.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 120.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 119.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 117.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 116.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 114.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 112.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 112.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 111.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 111.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 111.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 110.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 109.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 107.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 106.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 105.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 102.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 101.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 100.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 98.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 97.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 91.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 90.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 90.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 86.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 86.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 85.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 83.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 79.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 73.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 72.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 72.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 68.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 68.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 62.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 61.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 59.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 44.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 42.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 41.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 32.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 30.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 27.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 392.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 392.6
FF:10181-103D1 60 years, female 394.8
FF:10159-103A6 76 years, female 390.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 133.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 107.3
Samples: 4

Max nTPM: 130.1
Min nTPM: 69.0
Sample A Female 130.1
Sample B Female 110.5
Sample C Male 69.0
Sample D Male 119.7
Ventral spinal cord
nTPM: 133.3
Samples: 4

Max nTPM: 164.0
Min nTPM: 88.4
Sample A Female 164.0
Sample B Female 118.7
Sample C Male 88.4
Sample D Male 162.2

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