BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:32.3 nTPM
HPA:32.3 nTPM
GTEx:20.2 nTPM
FANTOM5:214.1 Scaled Tags Per Million
Pig:192.8 nTPM
Mouse:205.8 nTPM
Allen mouse:16.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 32.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 24.7
2846 Female, age 79, unknown 50.5
1857 Female, age 85, left hemisphere 36.2
2290 Female, age 72, unknown 34.4
1854 Male, age 80, left hemisphere 29.5
1781 Male, age 74, unknown 25.1
2289 Male, age 61, right hemisphere 11.9
2288 Male, age 75, left hemisphere 9.1
2481 Female, age 94, left hemisphere 0.9
Claustrum
nTPM: 0.0
1956 Male, age 74, unknown 0.0
2196 Female, age 79, unknown 0.0
2198 Male, age 80, both hemispheres 0.0
2284 Female, age 91, both hemispheres 0.0
2292 Female, age 85, both hemispheres 0.0
2392 Female, age 94, both hemispheres 0.0
2491 Male, age 75, both hemispheres 0.0
2568 Male, age 61, both hemispheres 0.0
2645 Female, age 72, unknown 0.0
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 21.1
1856 Female, age 91, right hemisphere 47.4
1783 Male, age 74, unknown 39.4
2824 Male, age 61, right hemisphere 32.1
1806 Female, age 85, left hemisphere 25.5
2698 Female, age 72, unknown 20.1
2286 Male, age 75, left hemisphere 4.4
2391 Female, age 94, left hemisphere 0.0
2732 Male, age 80, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 7.7
2393 Male, age 80, right hemisphere 23.5
2484 Female, age 94, left hemisphere 7.3
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 8.6
1812 Female, age 91, both hemispheres 18.7
2775 Male, age 80, right hemisphere 10.5
2029 Male, age 61, right hemisphere 8.8
2195 Female, age 85, both hemispheres 5.2
1979 Male, age 74, unknown 0.0
Olfactory tubercle
nTPM: 4.1
1846 Male, age 80, right hemisphere 8.6
1998 Female, age 91, both hemispheres 4.5
2487 Female, age 94, left hemisphere 3.3
2856 Male, age 75, right hemisphere 0.0
Putamen
nTPM: 32.3
1829 Male, age 74, unknown 59.1
1838 Male, age 80, right hemisphere 54.5
2466 Female, age 79, unknown 49.8
1937 Female, age 91, right hemisphere 41.3
2489 Female, age 72, unknown 18.2
2482 Female, age 94, left hemisphere 3.6
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 4.1
2009 Female, age 91, both hemispheres 9.8
2031 Female, age 72, unknown 8.2
2629 Female, age 94, right hemisphere 6.5
1960 Male, age 74, unknown 4.0
2059 Female, age 85, both hemispheres 0.0
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 20.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 20.2
Samples: 246

Max nTPM: 115.9
Min nTPM: 1.1
Std nTPM: 17.3
Median nTPM: 15.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 115.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 96.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 81.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 78.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 61.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 58.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 57.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 55.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 54.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 52.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 52.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 17.0
Samples: 246

Max nTPM: 76.4
Min nTPM: 0.9
Std nTPM: 12.3
Median nTPM: 15.6
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 76.4
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 56.8
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 50.6
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 48.7
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 45.2
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 44.6
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 44.4
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 44.1
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 43.1
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 40.4
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 39.6
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Brain - Putamen (basal ganglia)
Average nTPM: 19.0
Samples: 205

Max nTPM: 104.3
Min nTPM: 0.5
Std nTPM: 16.0
Median nTPM: 15.5
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 104.3
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 72.1
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 57.8
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 57.3
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 57.2
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 51.8
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 51.0
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 49.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 49.6
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 48.5
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 48.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 214.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 124.6
FF:10164-103B2 76 years, female 124.6
Globus pallidus
Scaled Tags Per Million: 65.3
FF:10175-103C4 60 years, female 99.4
FF:10161-103A8 76 years, female 31.2
Nucleus accumbens
Scaled Tags Per Million: 155.4
FF:10037-101F1 23-56 years, mixed 155.4
Putamen
Scaled Tags Per Million: 214.1
FF:10176-103C5 60 years, female 214.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 192.8
Pig sample Sample description nTPM
Caudate
nTPM: 151.1
Samples: 4

Max nTPM: 183.1
Min nTPM: 109.7
Sample A Female 109.7
Sample B Female 129.7
Sample C Male 183.1
Sample D Male 181.8
Putamen
nTPM: 192.8
Samples: 4

Max nTPM: 343.7
Min nTPM: 57.6
Sample A Female 57.6
Sample B Female 181.8
Sample C Male 343.7
Sample D Male 187.9
Septum
nTPM: 53.8
Samples: 4

Max nTPM: 71.7
Min nTPM: 24.6
Sample A Female 66.0
Sample B Female 71.7
Sample C Male 24.6
Sample D Male 52.7
Ventral pallidum
nTPM: 82.1
Samples: 4

Max nTPM: 130.2
Min nTPM: 25.0
Sample A Female 130.2
Sample B Female 85.7
Sample C Male 25.0
Sample D Male 87.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 205.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 205.9
Samples: 4

Max nTPM: 230.9
Min nTPM: 181.5
Sample A Male 230.9
Sample B Male 216.2
Sample C Female 181.5
Sample D Female 194.8
Septum
nTPM: 85.4
Samples: 4

Max nTPM: 95.9
Min nTPM: 69.9
Sample A Male 69.9
Sample B Male 95.9
Sample C Female 83.0
Sample D Female 92.9
Ventral forebrain
nTPM: 111.8
Samples: 4

Max nTPM: 115.2
Min nTPM: 106.6
Sample A Male 113.9
Sample B Male 115.2
Sample C Female 106.6
Sample D Female 111.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 16.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 16.4
73787952 Antisense, RP_051213_01_A04, Mouse strain C57BL/6J (56 days, male) 17.4
75988622 Antisense, RP_060620_02_E03, Mouse strain C57BL/6J (56 days, male) 16.6
69626849 Antisense, RP_050428_01_D05, Mouse strain C57BL/6J (56 days, male) 16.5
71161042 Antisense, RP_050810_02_E08, Mouse strain C57BL/6J (56 days, male) 15.2
Pallidum
Expression energy: 6.1
69626849 Antisense, RP_050428_01_D05, Mouse strain C57BL/6J (56 days, male) 10.2
71161042 Antisense, RP_050810_02_E08, Mouse strain C57BL/6J (56 days, male) 4.9
75988622 Antisense, RP_060620_02_E03, Mouse strain C57BL/6J (56 days, male) 4.7
73787952 Antisense, RP_051213_01_A04, Mouse strain C57BL/6J (56 days, male) 4.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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