BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:45.1 nTPM
HPA:45.1 nTPM
GTEx:43.3 nTPM
FANTOM5:47.4 Scaled Tags Per Million
Pig:38.2 nTPM
Mouse:55.6 nTPM
Allen mouse:7.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA027735
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 45.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 39.3
2288 Male, age 75, left hemisphere 41.3
2846 Female, age 79, unknown 41.0
1781 Male, age 74, unknown 39.7
1854 Male, age 80, left hemisphere 39.1
2481 Female, age 94, left hemisphere 38.6
2290 Female, age 72, unknown 38.5
1857 Female, age 85, left hemisphere 38.3
2289 Male, age 61, right hemisphere 38.1
Claustrum
nTPM: 43.5
2645 Female, age 72, unknown 46.1
2568 Male, age 61, both hemispheres 44.9
2198 Male, age 80, both hemispheres 44.4
2284 Female, age 91, both hemispheres 44.2
2196 Female, age 79, unknown 43.8
2491 Male, age 75, both hemispheres 43.5
1956 Male, age 74, unknown 43.1
2292 Female, age 85, both hemispheres 41.8
2392 Female, age 94, both hemispheres 40.1
Globus pallidus, externus
nTPM: 41.4
2646 Male, age 61, right hemisphere 43.9
2395 Male, age 75, both hemispheres 41.7
2772 Female, age 79, unknown 41.2
2567 Female, age 72, unknown 41.1
1996 Male, age 80, right hemisphere 38.9
Globus pallidus, internus
nTPM: 40.3
2483 Female, age 94, right hemisphere 42.2
1818 Male, age 74, unknown 41.9
2111 Female, age 85, right hemisphere 41.0
2566 Female, age 72, unknown 39.9
2778 Female, age 91, both hemispheres 39.7
2037 Male, age 80, right hemisphere 39.0
2287 Male, age 75, right hemisphere 38.5
Nucleus accumbens
nTPM: 39.2
1856 Female, age 91, right hemisphere 41.1
1783 Male, age 74, unknown 40.9
2698 Female, age 72, unknown 40.3
2286 Male, age 75, left hemisphere 39.7
1806 Female, age 85, left hemisphere 39.3
2732 Male, age 80, right hemisphere 39.2
2824 Male, age 61, right hemisphere 37.4
2391 Female, age 94, left hemisphere 35.5
Nucleus basalis of Meynert
nTPM: 39.9
2569 Male, age 61, both hemispheres 41.2
2821 Male, age 75, both hemispheres 40.8
2393 Male, age 80, right hemisphere 40.1
2484 Female, age 94, left hemisphere 37.6
Nucleus of the diagonal band
nTPM: 45.1
2775 Male, age 80, right hemisphere 47.9
2195 Female, age 85, both hemispheres 46.9
1812 Female, age 91, both hemispheres 45.9
2029 Male, age 61, right hemisphere 44.4
1979 Male, age 74, unknown 40.2
Olfactory tubercle
nTPM: 44.2
2487 Female, age 94, left hemisphere 45.7
1998 Female, age 91, both hemispheres 45.3
1846 Male, age 80, right hemisphere 45.2
2856 Male, age 75, right hemisphere 40.6
Putamen
nTPM: 40.0
2647 Male, age 75, left hemisphere 46.0
2482 Female, age 94, left hemisphere 40.4
2466 Female, age 79, unknown 39.7
1829 Male, age 74, unknown 39.3
2489 Female, age 72, unknown 38.6
1937 Female, age 91, right hemisphere 38.5
1838 Male, age 80, right hemisphere 37.7
Septal nuclei
nTPM: 43.3
1960 Male, age 74, unknown 48.4
2031 Female, age 72, unknown 46.6
2009 Female, age 91, both hemispheres 43.9
2629 Female, age 94, right hemisphere 43.0
2059 Female, age 85, both hemispheres 41.5
2199 Male, age 80, right hemisphere 40.3
2394 Male, age 61, left hemisphere 39.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 43.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 39.3
Samples: 246

Max nTPM: 70.9
Min nTPM: 22.2
Std nTPM: 8.1
Median nTPM: 39.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 70.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 69.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 65.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 59.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 58.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 56.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 55.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 55.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 55.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 54.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 53.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 42.7
Samples: 246

Max nTPM: 94.1
Min nTPM: 21.8
Std nTPM: 8.9
Median nTPM: 42.2
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 94.1
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 75.5
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 72.2
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 69.6
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 69.2
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 63.8
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 63.7
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 60.3
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 59.5
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 59.1
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 59.0
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Brain - Putamen (basal ganglia)
Average nTPM: 43.3
Samples: 205

Max nTPM: 70.5
Min nTPM: 22.2
Std nTPM: 8.8
Median nTPM: 43.2
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 70.5
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 69.2
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 68.2
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 67.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 63.5
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 63.3
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 61.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 60.6
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 58.8
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 58.2
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 58.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 47.4
FF:10164-103B2 76 years, female 47.4
Globus pallidus
Scaled Tags Per Million: 38.7
FF:10161-103A8 76 years, female 46.7
FF:10175-103C4 60 years, female 30.7
Nucleus accumbens
Scaled Tags Per Million: 41.8
FF:10037-101F1 23-56 years, mixed 41.8
Putamen
Scaled Tags Per Million: 42.1
FF:10176-103C5 60 years, female 42.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 38.2
Pig sample Sample description nTPM
Caudate
nTPM: 33.0
Samples: 4

Max nTPM: 39.7
Min nTPM: 25.9
Sample A Female 25.9
Sample B Female 36.9
Sample C Male 39.7
Sample D Male 29.5
Putamen
nTPM: 38.2
Samples: 4

Max nTPM: 45.0
Min nTPM: 30.7
Sample A Female 34.9
Sample B Female 30.7
Sample C Male 45.0
Sample D Male 42.1
Septum
nTPM: 34.3
Samples: 4

Max nTPM: 41.3
Min nTPM: 28.9
Sample A Female 34.2
Sample B Female 28.9
Sample C Male 41.3
Sample D Male 32.8
Ventral pallidum
nTPM: 34.7
Samples: 4

Max nTPM: 47.7
Min nTPM: 25.7
Sample A Female 25.7
Sample B Female 33.1
Sample C Male 47.7
Sample D Male 32.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 55.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 53.3
Samples: 4

Max nTPM: 57.4
Min nTPM: 48.0
Sample A Male 57.4
Sample B Male 56.0
Sample C Female 48.0
Sample D Female 51.8
Septum
nTPM: 50.7
Samples: 4

Max nTPM: 57.4
Min nTPM: 46.5
Sample A Male 57.4
Sample B Male 46.5
Sample C Female 50.8
Sample D Female 48.1
Ventral forebrain
nTPM: 55.7
Samples: 4

Max nTPM: 58.8
Min nTPM: 52.5
Sample A Male 57.2
Sample B Male 54.1
Sample C Female 52.5
Sample D Female 58.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 7.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 7.1
74819497 Antisense, RP_060315_02_F12, Mouse strain C57BL/6J (56 days, male) 7.7
69838419 Antisense, RP_050303_01_D10, Mouse strain C57BL/6J (56 days, male) 6.6
Pallidum
Expression energy: 7.1
74819497 Antisense, RP_060315_02_F12, Mouse strain C57BL/6J (56 days, male) 7.6
69838419 Antisense, RP_050303_01_D10, Mouse strain C57BL/6J (56 days, male) 6.5

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The Human Protein Atlas

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