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CCM2
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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM EPIDIDYMIS
ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
GTEx:130.8 nTPM
FANTOM5:72.3 Scaled Tags Per Million
Pig:36.2 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA020273Antibody HPA021669
Glial cells LowLow
Neuronal cells LowLow



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 130.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 130.8
Samples: 246

Max nTPM: 302.2
Min nTPM: 32.4
Std nTPM: 46.6
Median nTPM: 128.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 302.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 271.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 259.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 250.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 237.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 230.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 223.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 222.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 221.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 215.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 215.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 215.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 213.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 211.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 211.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 209.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 208.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 202.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 199.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 199.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 198.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 198.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 197.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 196.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 195.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 194.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 193.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 192.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 189.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 189.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 188.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 187.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 187.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 186.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 185.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 184.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 184.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 183.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 182.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 180.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 179.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 178.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 178.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 177.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 177.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 177.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 175.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 169.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 167.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 166.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 166.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 164.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 163.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 163.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 163.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 160.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 160.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 160.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 159.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 158.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 157.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 156.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 155.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 155.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 155.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 155.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 154.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 153.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 153.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 152.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 150.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 149.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 149.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 149.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 148.6
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 148.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 148.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 147.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 147.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 147.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 147.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 146.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 146.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 145.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 145.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 143.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 143.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 143.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 142.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 142.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 141.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 141.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 141.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 141.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 140.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 139.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 139.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 139.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 139.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 138.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 138.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 138.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 138.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 138.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 137.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 137.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 136.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 136.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 135.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 133.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 133.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 133.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 132.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 131.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 131.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 130.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 129.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 129.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 129.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 129.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 128.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 128.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 128.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 128.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 127.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 127.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 127.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 127.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 127.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 127.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 127.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 127.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 126.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 125.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 125.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 124.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 123.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 122.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 122.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 121.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 120.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 120.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 119.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 119.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 118.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 117.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 117.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 115.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 115.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 115.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 114.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 113.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 113.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 113.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 112.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 112.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 111.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 111.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 111.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 110.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 110.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 109.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 108.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 106.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 104.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 103.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 103.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 101.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 100.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 99.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 99.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 99.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 98.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 98.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 98.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 97.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 97.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 96.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 96.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 96.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 95.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 95.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 95.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 95.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 95.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 93.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 93.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 93.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 93.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 92.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 92.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 92.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 92.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 91.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 91.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 91.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 90.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 90.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 90.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 89.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 89.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 88.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 87.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 87.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 86.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 84.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 84.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 84.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 83.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 83.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 83.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 82.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 81.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 79.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 78.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 78.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 76.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 76.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 75.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 75.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 74.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 74.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 73.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 73.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 72.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 71.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 69.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 67.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 67.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 66.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 65.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 64.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 61.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 61.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 60.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 60.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 59.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 58.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 56.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 54.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 53.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 52.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 49.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 41.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 38.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 32.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 72.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 72.3
FF:10164-103B2 76 years, female 72.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 36.2
Pig sample Sample description nTPM
Caudate
nTPM: 36.2
Samples: 4

Max nTPM: 49.9
Min nTPM: 20.3
Sample A Female 20.3
Sample B Female 39.4
Sample C Male 49.9
Sample D Male 35.3

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