BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:37.8 nTPM
HPA:37.8 nTPM
GTEx:34.7 nTPM
FANTOM5:34.3 Scaled Tags Per Million
Pig:1.0 nTPM
Mouse:3.4 nTPM
Allen mouse:3.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA022436Antibody HPA022967
Glial cells Not detectedLow
Neuronal cells Not detectedLow


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 37.6
1857 Female, age 85, left hemisphere 39.3
1854 Male, age 80, left hemisphere 39.2
2289 Male, age 61, right hemisphere 38.5
2846 Female, age 79, unknown 38.1
1781 Male, age 74, unknown 37.9
2290 Female, age 72, unknown 37.5
2481 Female, age 94, left hemisphere 36.5
2288 Male, age 75, left hemisphere 34.1
Claustrum
nTPM: 34.3
2491 Male, age 75, both hemispheres 35.4
2198 Male, age 80, both hemispheres 35.3
2392 Female, age 94, both hemispheres 35.0
2568 Male, age 61, both hemispheres 34.8
2292 Female, age 85, both hemispheres 34.0
2284 Female, age 91, both hemispheres 33.8
2645 Female, age 72, unknown 33.8
1956 Male, age 74, unknown 33.5
2196 Female, age 79, unknown 33.4
Globus pallidus, externus
nTPM: 34.8
2567 Female, age 72, unknown 36.1
2395 Male, age 75, both hemispheres 35.0
2772 Female, age 79, unknown 34.9
1996 Male, age 80, right hemisphere 34.7
2646 Male, age 61, right hemisphere 33.5
Globus pallidus, internus
nTPM: 34.6
2483 Female, age 94, right hemisphere 35.5
2778 Female, age 91, both hemispheres 35.0
2566 Female, age 72, unknown 34.8
2037 Male, age 80, right hemisphere 34.4
2287 Male, age 75, right hemisphere 34.4
2111 Female, age 85, right hemisphere 34.2
1818 Male, age 74, unknown 33.6
Nucleus accumbens
nTPM: 36.8
2824 Male, age 61, right hemisphere 39.3
1806 Female, age 85, left hemisphere 38.7
1783 Male, age 74, unknown 38.6
1856 Female, age 91, right hemisphere 37.8
2732 Male, age 80, right hemisphere 35.5
2391 Female, age 94, left hemisphere 35.3
2286 Male, age 75, left hemisphere 35.2
2698 Female, age 72, unknown 33.9
Nucleus basalis of Meynert
nTPM: 36.3
2393 Male, age 80, right hemisphere 39.3
2484 Female, age 94, left hemisphere 38.6
2821 Male, age 75, both hemispheres 33.6
2569 Male, age 61, both hemispheres 33.5
Nucleus of the diagonal band
nTPM: 34.2
2029 Male, age 61, right hemisphere 35.8
2775 Male, age 80, right hemisphere 34.6
1812 Female, age 91, both hemispheres 34.5
1979 Male, age 74, unknown 33.0
2195 Female, age 85, both hemispheres 33.0
Olfactory tubercle
nTPM: 34.8
2487 Female, age 94, left hemisphere 35.2
1998 Female, age 91, both hemispheres 35.1
1846 Male, age 80, right hemisphere 34.5
2856 Male, age 75, right hemisphere 34.3
Putamen
nTPM: 37.8
2466 Female, age 79, unknown 40.6
1838 Male, age 80, right hemisphere 39.7
1829 Male, age 74, unknown 38.9
1937 Female, age 91, right hemisphere 38.0
2489 Female, age 72, unknown 37.9
2482 Female, age 94, left hemisphere 35.6
2647 Male, age 75, left hemisphere 34.1
Septal nuclei
nTPM: 33.8
2031 Female, age 72, unknown 35.3
2009 Female, age 91, both hemispheres 34.5
1960 Male, age 74, unknown 34.3
2059 Female, age 85, both hemispheres 34.2
2394 Male, age 61, left hemisphere 33.7
2629 Female, age 94, right hemisphere 32.6
2199 Male, age 80, right hemisphere 32.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 34.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 32.7
Samples: 246

Max nTPM: 56.5
Min nTPM: 17.8
Std nTPM: 6.8
Median nTPM: 32.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 56.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 53.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 52.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 52.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 51.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 50.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 48.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 48.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 47.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 46.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 46.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 32.4
Samples: 246

Max nTPM: 64.6
Min nTPM: 17.7
Std nTPM: 7.1
Median nTPM: 31.6
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 64.6
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 57.2
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 53.7
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 52.7
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 49.3
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 49.3
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 49.0
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 47.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 47.9
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 47.0
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 46.6
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Brain - Putamen (basal ganglia)
Average nTPM: 34.7
Samples: 205

Max nTPM: 57.8
Min nTPM: 20.8
Std nTPM: 7.4
Median nTPM: 33.5
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 57.8
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 55.3
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 54.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 52.2
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 51.3
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 50.4
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 49.0
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 49.0
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 48.5
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 48.1
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 48.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 33.4
FF:10164-103B2 76 years, female 33.4
Globus pallidus
Scaled Tags Per Million: 31.7
FF:10161-103A8 76 years, female 33.4
FF:10175-103C4 60 years, female 29.9
Nucleus accumbens
Scaled Tags Per Million: 21.2
FF:10037-101F1 23-56 years, mixed 21.2
Putamen
Scaled Tags Per Million: 34.3
FF:10176-103C5 60 years, female 34.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 1.0
Pig sample Sample description nTPM
Caudate
nTPM: 1.0
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.9
Sample A Female 0.9
Sample B Female 0.9
Sample C Male 1.1
Sample D Male 1.0
Putamen
nTPM: 1.1
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.9
Sample A Female 1.4
Sample B Female 0.9
Sample C Male 1.0
Sample D Male 0.9
Septum
nTPM: 0.9
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.5
Sample A Female 1.1
Sample B Female 0.5
Sample C Male 1.0
Sample D Male 1.0
Ventral pallidum
nTPM: 0.9
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.8
Sample A Female 0.9
Sample B Female 0.8
Sample C Male 1.2
Sample D Male 0.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 3.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2.8
Samples: 4

Max nTPM: 3.1
Min nTPM: 2.5
Sample A Male 3.1
Sample B Male 2.5
Sample C Female 3.0
Sample D Female 2.5
Septum
nTPM: 3.2
Samples: 4

Max nTPM: 3.7
Min nTPM: 2.9
Sample A Male 3.7
Sample B Male 3.0
Sample C Female 2.9
Sample D Female 3.0
Ventral forebrain
nTPM: 3.4
Samples: 4

Max nTPM: 4.3
Min nTPM: 2.3
Sample A Male 4.3
Sample B Male 3.4
Sample C Female 2.3
Sample D Female 3.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.1
69529167 Antisense, RP_050421_03_F10, Mouse strain C57BL/6J (56 days, male) 3.1
Pallidum
Expression energy: 2.8
69529167 Antisense, RP_050421_03_F10, Mouse strain C57BL/6J (56 days, male) 2.8

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The Human Protein Atlas

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