MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:46.4 nTPM
HPA:46.4 nTPM
GTEx:42.4 nTPM
FANTOM5:75.3 Scaled Tags Per Million
Pig:72.0 nTPM
Mouse:68.4 nTPM
Allen mouse:3.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 46.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.7
2586 Male, age 75, left hemisphere 56.0
1833 Male, age 53, unknown 44.2
2411 Female, age 72, unknown 42.3
1830 Male, age 51, unknown 42.0
1870 Female, age 42, unknown 41.9
1827 Male, age 72, unknown 40.0
2666 Male, age 74, left hemisphere 39.8
2828 Female, age 72, unknown 39.7
2019 Male, age 18, unknown 37.9
2219 Male, age 76, both hemispheres 33.1
Dorsal raphe nucleus
nTPM: 40.8
1828 Male, age 53, unknown 44.7
2750 Male, age 76, both hemispheres 43.4
2047 Male, age 72, unknown 40.7
2016 Female, age 72, unknown 39.3
2298 Female, age 72, unknown 36.1
Inferior colliculus
nTPM: 41.8
2849 Male, age 72, unknown 42.9
1890 Male, age 53, unknown 42.5
2097 Female, age 72, unknown 41.1
1848 Female, age 42, unknown 40.7
Median raphe nucleus
nTPM: 39.3
2220 Male, age 76, midline 39.3
Pedunculopontine tegmental nucleus
nTPM: 39.5
2334 Male, age 80, both hemispheres 42.4
2338 Male, age 61, both hemispheres 39.9
1921 Female, age 85, both hemispheres 36.3
Periaquaductal grey, anterior
nTPM: 36.9
1947 Male, age 18, unknown 39.9
2502 Female, age 75, unknown 35.9
1795 Male, age 51, unknown 35.0
Periaquaductal grey, dorsal
nTPM: 40.0
1840 Male, age 53, unknown 41.3
2850 Male, age 76, both hemispheres 40.2
2464 Female, age 72, unknown 39.5
1831 Male, age 72, unknown 39.2
Periaquaductal grey, lateral
nTPM: 37.1
2140 Male, age 76, both hemispheres 40.3
2053 Male, age 18, unknown 37.6
2272 Male, age 74, both hemispheres 33.5
Pretectal area
nTPM: 34.5
2825 Male, age 18, unknown 40.9
1817 Female, age 42, unknown 36.0
2316 Male, age 76, right hemisphere 35.4
1815 Male, age 53, unknown 35.0
2224 Female, age 72, unknown 34.8
2407 Male, age 75, both hemispheres 34.3
1944 Female, age 72, unknown 34.2
1816 Male, age 51, unknown 33.8
2007 Male, age 72, unknown 32.9
2667 Female, age 75, unknown 32.8
2273 Male, age 74, both hemispheres 29.9
Red nucleus
nTPM: 46.0
1821 Female, age 72, unknown 51.1
2584 Male, age 75, left hemisphere 50.7
2588 Male, age 74, left hemisphere 48.0
2227 Male, age 72, unknown 46.4
1954 Female, age 42, unknown 46.2
2725 Female, age 75, unknown 46.1
2769 Male, age 72, unknown 45.8
2823 Male, age 76, right hemisphere 45.6
1865 Male, age 51, unknown 45.0
1904 Male, age 53, unknown 44.6
2503 Female, age 72, unknown 43.7
2785 Male, age 18, unknown 38.6
Substantia nigra
nTPM: 46.4
2590 Female, age 75, unknown 50.0
1851 Male, age 51, unknown 49.3
2241 Male, age 72, unknown 49.2
2699 Male, age 18, unknown 47.5
2665 Male, age 74, both hemispheres 46.5
2409 Female, age 72, unknown 46.4
1916 Female, age 42, unknown 46.3
2583 Male, age 75, right hemisphere 46.1
1889 Female, age 72, unknown 41.6
1941 Male, age 53, unknown 41.2
Superior colliculus
nTPM: 37.1
1895 Male, age 76, right hemisphere 40.0
1839 Male, age 51, unknown 39.8
2587 Male, age 74, left hemisphere 38.3
1796 Male, age 53, unknown 38.0
1995 Male, age 72, unknown 37.2
2664 Male, age 75, both hemispheres 37.2
2668 Female, age 75, unknown 36.9
1913 Female, age 42, unknown 36.2
2261 Male, age 18, unknown 35.7
2087 Female, age 72, unknown 31.9
Ventral tegmental area
nTPM: 42.6
1915 Female, age 42, unknown 45.7
2410 Female, age 72, unknown 45.2
2223 Female, age 72, unknown 44.2
2218 Male, age 76, both hemispheres 42.2
1942 Male, age 51, unknown 40.0
2021 Male, age 53, unknown 38.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.4
Samples: 139

Max nTPM: 75.6
Min nTPM: 22.5
Std nTPM: 10.4
Median nTPM: 40.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 75.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 71.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 68.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 66.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 64.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 64.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 64.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 62.4
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 62.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 61.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 60.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 75.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 75.3
FF:10158-103A5 76 years, female 75.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 72.0
Pig sample Sample description nTPM
Midbrain
nTPM: 72.0
Samples: 4

Max nTPM: 91.4
Min nTPM: 54.6
Sample A Female 91.4
Sample B Female 54.6
Sample C Male 83.6
Sample D Male 58.4
Periaqueductal gray
nTPM: 48.8
Samples: 3

Max nTPM: 51.8
Min nTPM: 47.0
Sample B Female 51.8
Sample C Male 47.6
Sample D Male 47.0
Substantia nigra
nTPM: 62.9
Samples: 4

Max nTPM: 73.6
Min nTPM: 45.4
Sample A Female 68.8
Sample B Female 45.4
Sample C Male 63.9
Sample D Male 73.6
Superior colliculi
nTPM: 60.3
Samples: 4

Max nTPM: 75.4
Min nTPM: 35.3
Sample A Female 66.8
Sample B Female 35.3
Sample C Male 63.6
Sample D Male 75.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 68.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 68.4
Samples: 4

Max nTPM: 72.8
Min nTPM: 63.6
Sample A Male 63.6
Sample B Male 70.9
Sample C Female 72.8
Sample D Female 66.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.9
68798729 Antisense, RP_050217_01_B06, Mouse strain C57BL/6J (56 days, male) 3.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.