MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:36.6 nTPM
HPA:36.6 nTPM
GTEx:94.6 nTPM
FANTOM5:151.8 Scaled Tags Per Million
Pig:37.3 nTPM
Mouse:373.6 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.8
2019 Male, age 18, unknown 38.1
1827 Male, age 72, unknown 36.9
1870 Female, age 42, unknown 35.8
2666 Male, age 74, left hemisphere 33.3
2411 Female, age 72, unknown 33.2
2219 Male, age 76, both hemispheres 32.8
2828 Female, age 72, unknown 32.7
2586 Male, age 75, left hemisphere 32.5
1833 Male, age 53, unknown 31.5
1830 Male, age 51, unknown 30.9
Dorsal raphe nucleus
nTPM: 34.0
1828 Male, age 53, unknown 35.7
2298 Female, age 72, unknown 35.7
2047 Male, age 72, unknown 33.7
2750 Male, age 76, both hemispheres 33.7
2016 Female, age 72, unknown 31.1
Inferior colliculus
nTPM: 35.6
2097 Female, age 72, unknown 37.7
1890 Male, age 53, unknown 37.2
1848 Female, age 42, unknown 34.5
2849 Male, age 72, unknown 33.0
Median raphe nucleus
nTPM: 33.0
2220 Male, age 76, midline 33.0
Pedunculopontine tegmental nucleus
nTPM: 36.6
1921 Female, age 85, both hemispheres 38.3
2334 Male, age 80, both hemispheres 35.9
2338 Male, age 61, both hemispheres 35.6
Periaquaductal grey, anterior
nTPM: 34.8
1795 Male, age 51, unknown 35.7
2502 Female, age 75, unknown 35.0
1947 Male, age 18, unknown 33.8
Periaquaductal grey, dorsal
nTPM: 33.8
2850 Male, age 76, both hemispheres 34.4
1840 Male, age 53, unknown 34.3
2464 Female, age 72, unknown 33.9
1831 Male, age 72, unknown 32.7
Periaquaductal grey, lateral
nTPM: 33.4
2053 Male, age 18, unknown 34.5
2140 Male, age 76, both hemispheres 33.4
2272 Male, age 74, both hemispheres 32.3
Pretectal area
nTPM: 36.2
1944 Female, age 72, unknown 41.1
1817 Female, age 42, unknown 40.3
2007 Male, age 72, unknown 40.3
1816 Male, age 51, unknown 39.2
1815 Male, age 53, unknown 36.5
2667 Female, age 75, unknown 36.4
2273 Male, age 74, both hemispheres 34.6
2224 Female, age 72, unknown 32.8
2407 Male, age 75, both hemispheres 32.8
2316 Male, age 76, right hemisphere 32.4
2825 Male, age 18, unknown 31.7
Red nucleus
nTPM: 35.1
1821 Female, age 72, unknown 39.3
1904 Male, age 53, unknown 36.4
2785 Male, age 18, unknown 35.5
2823 Male, age 76, right hemisphere 35.4
2769 Male, age 72, unknown 35.0
1954 Female, age 42, unknown 34.6
2725 Female, age 75, unknown 34.4
1865 Male, age 51, unknown 34.2
2503 Female, age 72, unknown 34.2
2584 Male, age 75, left hemisphere 34.1
2227 Male, age 72, unknown 34.0
2588 Male, age 74, left hemisphere 33.8
Substantia nigra
nTPM: 35.3
1889 Female, age 72, unknown 41.8
1851 Male, age 51, unknown 40.6
1916 Female, age 42, unknown 36.9
1941 Male, age 53, unknown 34.2
2241 Male, age 72, unknown 34.0
2665 Male, age 74, both hemispheres 33.9
2590 Female, age 75, unknown 33.5
2699 Male, age 18, unknown 33.5
2583 Male, age 75, right hemisphere 33.3
2409 Female, age 72, unknown 31.2
Superior colliculus
nTPM: 35.3
2087 Female, age 72, unknown 38.4
1895 Male, age 76, right hemisphere 38.2
2668 Female, age 75, unknown 36.6
2261 Male, age 18, unknown 36.4
2587 Male, age 74, left hemisphere 35.1
2664 Male, age 75, both hemispheres 34.5
1995 Male, age 72, unknown 34.2
1796 Male, age 53, unknown 33.9
1913 Female, age 42, unknown 33.9
1839 Male, age 51, unknown 31.9
Ventral tegmental area
nTPM: 34.1
1915 Female, age 42, unknown 36.2
2218 Male, age 76, both hemispheres 34.8
1942 Male, age 51, unknown 33.6
2223 Female, age 72, unknown 33.6
2410 Female, age 72, unknown 33.4
2021 Male, age 53, unknown 33.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 94.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 94.6
Samples: 139

Max nTPM: 196.8
Min nTPM: 51.1
Std nTPM: 24.2
Median nTPM: 91.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 196.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 178.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 174.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 171.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 170.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 146.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 132.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 132.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 128.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 127.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 125.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 151.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 151.8
FF:10158-103A5 76 years, female 151.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 37.3
Pig sample Sample description nTPM
Midbrain
nTPM: 29.5
Samples: 4

Max nTPM: 34.5
Min nTPM: 21.2
Sample A Female 21.2
Sample B Female 27.8
Sample C Male 34.4
Sample D Male 34.5
Periaqueductal gray
nTPM: 24.2
Samples: 3

Max nTPM: 28.8
Min nTPM: 21.1
Sample B Female 22.8
Sample C Male 28.8
Sample D Male 21.1
Substantia nigra
nTPM: 27.6
Samples: 4

Max nTPM: 37.1
Min nTPM: 16.3
Sample A Female 37.1
Sample B Female 23.2
Sample C Male 33.8
Sample D Male 16.3
Superior colliculi
nTPM: 37.3
Samples: 4

Max nTPM: 41.5
Min nTPM: 31.9
Sample A Female 41.5
Sample B Female 34.1
Sample C Male 41.5
Sample D Male 31.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 373.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 373.6
Samples: 4

Max nTPM: 421.1
Min nTPM: 338.1
Sample A Male 421.1
Sample B Male 338.1
Sample C Female 353.8
Sample D Female 381.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
71763831 Antisense, RP_050921_02_F12, Mouse strain C57BL/6J (56 days, male) 1.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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