BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:16.1 nTPM
HPA:16.1 nTPM
GTEx:18.8 nTPM
FANTOM5:63.9 Scaled Tags Per Million
Pig:13.5 nTPM
Mouse:7.7 nTPM
Allen mouse:0.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 16.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 13.8
2846 Female, age 79, unknown 16.9
2481 Female, age 94, left hemisphere 15.9
2290 Female, age 72, unknown 15.7
2288 Male, age 75, left hemisphere 13.9
1857 Female, age 85, left hemisphere 12.4
1854 Male, age 80, left hemisphere 12.2
2289 Male, age 61, right hemisphere 12.1
1781 Male, age 74, unknown 10.9
Claustrum
nTPM: 13.4
2198 Male, age 80, both hemispheres 16.0
2284 Female, age 91, both hemispheres 14.4
2491 Male, age 75, both hemispheres 13.8
2196 Female, age 79, unknown 13.5
1956 Male, age 74, unknown 13.4
2292 Female, age 85, both hemispheres 13.2
2645 Female, age 72, unknown 12.3
2568 Male, age 61, both hemispheres 12.2
2392 Female, age 94, both hemispheres 12.0
Globus pallidus, externus
nTPM: 16.1
2772 Female, age 79, unknown 18.8
1996 Male, age 80, right hemisphere 17.2
2646 Male, age 61, right hemisphere 16.2
2567 Female, age 72, unknown 15.8
2395 Male, age 75, both hemispheres 12.4
Globus pallidus, internus
nTPM: 14.9
2287 Male, age 75, right hemisphere 19.2
2483 Female, age 94, right hemisphere 17.3
2037 Male, age 80, right hemisphere 14.9
1818 Male, age 74, unknown 13.7
2111 Female, age 85, right hemisphere 13.6
2778 Female, age 91, both hemispheres 12.7
2566 Female, age 72, unknown 12.6
Nucleus accumbens
nTPM: 13.5
1806 Female, age 85, left hemisphere 16.1
1783 Male, age 74, unknown 15.2
2698 Female, age 72, unknown 13.9
2286 Male, age 75, left hemisphere 13.1
2732 Male, age 80, right hemisphere 12.8
1856 Female, age 91, right hemisphere 12.7
2391 Female, age 94, left hemisphere 12.1
2824 Male, age 61, right hemisphere 11.8
Nucleus basalis of Meynert
nTPM: 13.5
2569 Male, age 61, both hemispheres 15.1
2484 Female, age 94, left hemisphere 14.5
2821 Male, age 75, both hemispheres 12.1
2393 Male, age 80, right hemisphere 12.0
Nucleus of the diagonal band
nTPM: 13.5
1812 Female, age 91, both hemispheres 15.4
1979 Male, age 74, unknown 14.7
2775 Male, age 80, right hemisphere 14.3
2195 Female, age 85, both hemispheres 12.7
2029 Male, age 61, right hemisphere 10.2
Olfactory tubercle
nTPM: 12.8
1846 Male, age 80, right hemisphere 14.3
2487 Female, age 94, left hemisphere 13.3
2856 Male, age 75, right hemisphere 12.1
1998 Female, age 91, both hemispheres 11.6
Putamen
nTPM: 13.7
2489 Female, age 72, unknown 15.4
2647 Male, age 75, left hemisphere 15.3
2482 Female, age 94, left hemisphere 14.9
2466 Female, age 79, unknown 14.8
1829 Male, age 74, unknown 13.1
1937 Female, age 91, right hemisphere 11.7
1838 Male, age 80, right hemisphere 10.5
Septal nuclei
nTPM: 12.1
1960 Male, age 74, unknown 15.2
2031 Female, age 72, unknown 13.9
2629 Female, age 94, right hemisphere 13.0
2199 Male, age 80, right hemisphere 12.1
2059 Female, age 85, both hemispheres 11.5
2394 Male, age 61, left hemisphere 9.6
2009 Female, age 91, both hemispheres 9.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 18.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 17.4
Samples: 246

Max nTPM: 45.3
Min nTPM: 2.5
Std nTPM: 6.4
Median nTPM: 17.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 45.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 41.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 38.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 37.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 36.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 31.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 30.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 30.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 29.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 29.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 29.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 18.3
Samples: 246

Max nTPM: 38.7
Min nTPM: 2.0
Std nTPM: 6.2
Median nTPM: 18.0
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 38.7
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 37.9
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 35.9
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 32.1
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 31.8
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 31.6
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 30.0
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 29.8
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 29.7
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 29.4
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 28.8
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Brain - Putamen (basal ganglia)
Average nTPM: 18.8
Samples: 205

Max nTPM: 45.1
Min nTPM: 4.2
Std nTPM: 5.8
Median nTPM: 18.8
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 45.1
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 33.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 32.2
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 31.5
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 30.1
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 29.8
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 29.6
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 29.3
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 28.3
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 27.8
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 27.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 63.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 52.7
FF:10164-103B2 76 years, female 52.7
Globus pallidus
Scaled Tags Per Million: 57.1
FF:10161-103A8 76 years, female 58.1
FF:10175-103C4 60 years, female 56.0
Nucleus accumbens
Scaled Tags Per Million: 63.9
FF:10037-101F1 23-56 years, mixed 63.9
Putamen
Scaled Tags Per Million: 62.2
FF:10176-103C5 60 years, female 62.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 13.5
Pig sample Sample description nTPM
Caudate
nTPM: 11.9
Samples: 4

Max nTPM: 13.6
Min nTPM: 10.0
Sample A Female 10.0
Sample B Female 13.6
Sample C Male 12.2
Sample D Male 11.8
Putamen
nTPM: 13.6
Samples: 4

Max nTPM: 15.1
Min nTPM: 11.7
Sample A Female 11.7
Sample B Female 12.8
Sample C Male 14.6
Sample D Male 15.1
Septum
nTPM: 12.7
Samples: 4

Max nTPM: 13.5
Min nTPM: 11.9
Sample A Female 13.5
Sample B Female 13.3
Sample C Male 12.2
Sample D Male 11.9
Ventral pallidum
nTPM: 12.1
Samples: 4

Max nTPM: 14.5
Min nTPM: 10.3
Sample A Female 10.3
Sample B Female 14.5
Sample C Male 12.0
Sample D Male 11.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 7.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 7.7
Samples: 4

Max nTPM: 7.9
Min nTPM: 7.4
Sample A Male 7.9
Sample B Male 7.7
Sample C Female 7.8
Sample D Female 7.4
Septum
nTPM: 6.5
Samples: 4

Max nTPM: 7.1
Min nTPM: 6.1
Sample A Male 6.2
Sample B Male 6.1
Sample C Female 6.7
Sample D Female 7.1
Ventral forebrain
nTPM: 6.9
Samples: 4

Max nTPM: 7.0
Min nTPM: 6.6
Sample A Male 6.6
Sample B Male 6.9
Sample C Female 7.0
Sample D Female 7.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.5
69608857 Antisense, RP_050426_04_D03, Mouse strain C57BL/6J (56 days, male) 0.5
Pallidum
Expression energy: 0.3
69608857 Antisense, RP_050426_04_D03, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

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