MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:44.1 nTPM
HPA:44.1 nTPM
GTEx:38.5 nTPM
FANTOM5:32.1 Scaled Tags Per Million
Pig:29.0 nTPM
Mouse:43.2 nTPM
Allen mouse:7.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 44.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.5
2586 Male, age 75, left hemisphere 50.0
2828 Female, age 72, unknown 42.8
2219 Male, age 76, both hemispheres 41.5
1870 Female, age 42, unknown 40.1
2666 Male, age 74, left hemisphere 39.9
2019 Male, age 18, unknown 39.1
1830 Male, age 51, unknown 38.4
2411 Female, age 72, unknown 38.4
1833 Male, age 53, unknown 37.8
1827 Male, age 72, unknown 36.8
Dorsal raphe nucleus
nTPM: 41.0
2016 Female, age 72, unknown 45.5
2047 Male, age 72, unknown 40.8
1828 Male, age 53, unknown 39.8
2298 Female, age 72, unknown 39.6
2750 Male, age 76, both hemispheres 39.4
Inferior colliculus
nTPM: 37.9
2849 Male, age 72, unknown 40.1
1890 Male, age 53, unknown 39.1
2097 Female, age 72, unknown 36.6
1848 Female, age 42, unknown 35.6
Median raphe nucleus
nTPM: 35.5
2220 Male, age 76, midline 35.5
Pedunculopontine tegmental nucleus
nTPM: 36.9
1921 Female, age 85, both hemispheres 39.7
2334 Male, age 80, both hemispheres 36.8
2338 Male, age 61, both hemispheres 34.1
Periaquaductal grey, anterior
nTPM: 44.1
1947 Male, age 18, unknown 44.8
1795 Male, age 51, unknown 43.8
2502 Female, age 75, unknown 43.8
Periaquaductal grey, dorsal
nTPM: 40.0
2850 Male, age 76, both hemispheres 42.6
1840 Male, age 53, unknown 40.4
2464 Female, age 72, unknown 39.8
1831 Male, age 72, unknown 37.0
Periaquaductal grey, lateral
nTPM: 43.5
2272 Male, age 74, both hemispheres 46.9
2140 Male, age 76, both hemispheres 46.1
2053 Male, age 18, unknown 37.4
Pretectal area
nTPM: 40.4
2273 Male, age 74, both hemispheres 48.3
2007 Male, age 72, unknown 41.9
2224 Female, age 72, unknown 41.4
2316 Male, age 76, right hemisphere 41.3
2407 Male, age 75, both hemispheres 40.0
1944 Female, age 72, unknown 39.5
1815 Male, age 53, unknown 39.4
2825 Male, age 18, unknown 39.3
2667 Female, age 75, unknown 39.1
1816 Male, age 51, unknown 37.7
1817 Female, age 42, unknown 36.8
Red nucleus
nTPM: 38.6
2769 Male, age 72, unknown 43.4
2785 Male, age 18, unknown 42.4
2227 Male, age 72, unknown 42.0
2588 Male, age 74, left hemisphere 40.5
2584 Male, age 75, left hemisphere 40.2
2503 Female, age 72, unknown 38.8
2725 Female, age 75, unknown 38.1
1904 Male, age 53, unknown 37.7
1865 Male, age 51, unknown 36.1
1954 Female, age 42, unknown 36.1
2823 Male, age 76, right hemisphere 34.4
1821 Female, age 72, unknown 33.7
Substantia nigra
nTPM: 38.9
1916 Female, age 42, unknown 42.0
1851 Male, age 51, unknown 41.2
2699 Male, age 18, unknown 41.0
1941 Male, age 53, unknown 40.8
2583 Male, age 75, right hemisphere 40.0
2665 Male, age 74, both hemispheres 39.7
2590 Female, age 75, unknown 39.5
1889 Female, age 72, unknown 37.8
2241 Male, age 72, unknown 34.3
2409 Female, age 72, unknown 33.0
Superior colliculus
nTPM: 39.3
2664 Male, age 75, both hemispheres 42.4
2261 Male, age 18, unknown 40.2
2668 Female, age 75, unknown 40.2
1839 Male, age 51, unknown 40.0
1913 Female, age 42, unknown 39.5
1796 Male, age 53, unknown 39.0
1895 Male, age 76, right hemisphere 38.9
1995 Male, age 72, unknown 38.9
2587 Male, age 74, left hemisphere 38.7
2087 Female, age 72, unknown 34.7
Ventral tegmental area
nTPM: 40.0
1942 Male, age 51, unknown 44.3
1915 Female, age 42, unknown 41.6
2021 Male, age 53, unknown 41.4
2218 Male, age 76, both hemispheres 39.3
2223 Female, age 72, unknown 37.0
2410 Female, age 72, unknown 36.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.5
Samples: 139

Max nTPM: 65.8
Min nTPM: 21.7
Std nTPM: 7.0
Median nTPM: 37.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 65.8
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 54.6
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 54.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 54.0
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 53.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 52.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 52.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 52.1
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 51.6
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 50.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 50.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.1
FF:10158-103A5 76 years, female 32.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.0
Pig sample Sample description nTPM
Midbrain
nTPM: 26.7
Samples: 4

Max nTPM: 32.4
Min nTPM: 20.4
Sample A Female 20.4
Sample B Female 24.2
Sample C Male 32.4
Sample D Male 29.7
Periaqueductal gray
nTPM: 25.1
Samples: 3

Max nTPM: 31.3
Min nTPM: 21.7
Sample B Female 22.4
Sample C Male 31.3
Sample D Male 21.7
Substantia nigra
nTPM: 26.6
Samples: 4

Max nTPM: 32.9
Min nTPM: 18.5
Sample A Female 32.9
Sample B Female 23.4
Sample C Male 31.6
Sample D Male 18.5
Superior colliculi
nTPM: 29.0
Samples: 4

Max nTPM: 33.1
Min nTPM: 25.3
Sample A Female 33.1
Sample B Female 25.3
Sample C Male 29.2
Sample D Male 28.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 43.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.2
Samples: 4

Max nTPM: 46.2
Min nTPM: 39.5
Sample A Male 46.2
Sample B Male 43.0
Sample C Female 39.5
Sample D Female 44.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.2
293258 Antisense, RP_040617_01_A05, Mouse strain C57BL/6J (56 days, male) 8.7
81599610 Antisense, RP_071126_01_B08, Mouse strain C57BL/6J (56 days, male) 5.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.