COLON - Expression summary
Protein expression
Coloni
h
m
l
n
Endothelial cells: High
Glandular cells: High
Peripheral nerve/ganglion: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:49.3 nTPM
HPA:16.3 nTPM
GTEx:49.3 nTPM
FANTOM5:32.0 Scaled Tags Per Million

COLON - Antibody stainingi
Antibody HPA006738Antibody CAB004216
Endothelial cells HighMedium
Glandular cells HighHigh
Peripheral nerve/ganglion HighHigh


COLON - HPA RNA-seqi
Average nTPM 16.3
overview
Male, age 54 		Colon sample 67
nTPM: 18.8
Cell types%
Glandular cells:
65

Smooth muscle cells:
10

Other cell types:
25
overview
Female, age 57 		Colon sample 68
nTPM: 14.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55
overview
Male, age 80 		Colon sample 69
nTPM: 14.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40
overview
Male, age 68 		Colon sample 70
nTPM: 24.5
Cell types%
Glandular cells:
35

Smooth muscle cells:
10

Other cell types:
55
overview
Female, age 68 		Colon sample 76
nTPM: 12.8
Cell types%
Glandular cells:
25

Smooth muscle cells:
5

Other cell types:
70
overview
Female, age 61 		Colon sample 299
nTPM: 14.6
Cell types%
Glandular cells:
5

Smooth muscle cells:
65

Other cell types:
30
overview
Male, age 80 		Colon sample 300
nTPM: 11.2
Cell types%
Glandular cells:
15

Smooth muscle cells:
20

Other cell types:
65
overview
Female, age 78 		Colon sample 368
nTPM: 15.9
Cell types%
Glandular cells:
45

Smooth muscle cells:
5

Other cell types:
50
overview
Male, age 84 		Colon sample 381
nTPM: 15.7
Cell types%
Glandular cells:
50

Smooth muscle cells:
15

Other cell types:
35
overview
Male, age 80 		Colon sample 384
nTPM: 14.8
Cell types%
Glandular cells:
20

Smooth muscle cells:
35

Other cell types:
45
overview
Female, age 78 		Colon sample 389
nTPM: 14.2
Cell types%
Glandular cells:
35

Smooth muscle cells:
10

Other cell types:
55
overview
Female, age 69 		Colon sample 391
nTPM: 17.1
Cell types%
Glandular cells:
10

Smooth muscle cells:
45

Other cell types:
45
overview
Female, age 72 		Colon sample 403
nTPM: 23
Cell types%
Glandular cells:
20

Smooth muscle cells:
15

Other cell types:
65

COLON - GTEx RNA-seqi
Average nTPM 49.3
GTEx sample id Sample description nTPM
Colon - Sigmoid
Average nTPM: 49.3
Samples: 373

Max nTPM: 89.9
Min nTPM: 24.0
Std nTPM: 12.5
Median nTPM: 47.7
GTEX-1J8EW-2426-SM-CE6T5 60-69 years, female 89.9
GTEX-16XZZ-2726-SM-7EWDO 60-69 years, male 83.6
GTEX-1HCU6-2926-SM-B2LWV 60-69 years, female 82.9
GTEX-13PVQ-2726-SM-5L3H7 50-59 years, male 82.6
GTEX-1LKK1-2426-SM-DIPES 50-59 years, female 81.1
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 81.0
GTEX-13PL7-2426-SM-5J2N3 60-69 years, female 79.1
GTEX-1HSEH-1926-SM-A96SB 60-69 years, male 79.0
GTEX-1GMRU-2626-SM-9WPPM 50-59 years, male 78.8
GTEX-1JN6P-2126-SM-ARL98 60-69 years, male 78.6
GTEX-11DXY-2026-SM-5N9CZ 60-69 years, male 78.5
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Colon - Transverse
Average nTPM: 36.1
Samples: 406

Max nTPM: 77.5
Min nTPM: 18.1
Std nTPM: 10.0
Median nTPM: 33.6
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 77.5
GTEX-1JMLX-2726-SM-CM2SB 50-59 years, male 76.5
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 73.5
GTEX-1LG7Y-2126-SM-DIPER 50-59 years, male 70.4
GTEX-145MO-2426-SM-5NQ9W 60-69 years, male 66.0
GTEX-13O61-1626-SM-5KM3T 60-69 years, male 63.1
GTEX-X4EO-2526-SM-EWRM8 60-69 years, female 62.2
GTEX-16XZZ-2626-SM-6M47S 60-69 years, male 60.2
GTEX-1QMI2-2626-SM-E6CR4 60-69 years, male 59.3
GTEX-RWS6-1826-SM-47JXX 60-69 years, female 58.8
GTEX-15DZA-0926-SM-69LQ3 30-39 years, female 58.7
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COLON - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Colon
Scaled Tags Per Million: 32.0
FF:10014-101C5 62,83,84 years, mixed 32.0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.