BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:55.5 nTPM
HPA:55.5 nTPM
GTEx:67.5 nTPM
FANTOM5:129.3 Scaled Tags Per Million
Pig:17.5 nTPM
Mouse:59.1 nTPM
Allen mouse:13.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA021216Antibody HPA021232Antibody HPA021242
Glial cells Not detectedMediumNot detected
Neuronal cells LowMediumLow





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 55.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 54.0
2481 Female, age 94, left hemisphere 56.0
2846 Female, age 79, unknown 55.7
2288 Male, age 75, left hemisphere 55.1
2290 Female, age 72, unknown 54.9
1857 Female, age 85, left hemisphere 54.2
1854 Male, age 80, left hemisphere 53.1
1781 Male, age 74, unknown 51.8
2289 Male, age 61, right hemisphere 50.9
Claustrum
nTPM: 52.7
1956 Male, age 74, unknown 54.3
2196 Female, age 79, unknown 53.9
2198 Male, age 80, both hemispheres 53.7
2491 Male, age 75, both hemispheres 52.9
2568 Male, age 61, both hemispheres 52.8
2284 Female, age 91, both hemispheres 52.5
2292 Female, age 85, both hemispheres 52.5
2645 Female, age 72, unknown 50.8
2392 Female, age 94, both hemispheres 50.7
Globus pallidus, externus
nTPM: 54.1
1996 Male, age 80, right hemisphere 55.8
2646 Male, age 61, right hemisphere 55.4
2772 Female, age 79, unknown 53.3
2395 Male, age 75, both hemispheres 53.2
2567 Female, age 72, unknown 53.1
Globus pallidus, internus
nTPM: 55.5
2287 Male, age 75, right hemisphere 59.1
2483 Female, age 94, right hemisphere 57.6
2037 Male, age 80, right hemisphere 55.4
2778 Female, age 91, both hemispheres 55.2
2111 Female, age 85, right hemisphere 54.4
2566 Female, age 72, unknown 53.5
1818 Male, age 74, unknown 53.0
Nucleus accumbens
nTPM: 53.8
2698 Female, age 72, unknown 56.0
2286 Male, age 75, left hemisphere 54.4
2824 Male, age 61, right hemisphere 54.0
1783 Male, age 74, unknown 53.6
1856 Female, age 91, right hemisphere 53.5
2391 Female, age 94, left hemisphere 53.4
1806 Female, age 85, left hemisphere 53.2
2732 Male, age 80, right hemisphere 52.1
Nucleus basalis of Meynert
nTPM: 53.4
2569 Male, age 61, both hemispheres 55.6
2393 Male, age 80, right hemisphere 54.0
2821 Male, age 75, both hemispheres 52.8
2484 Female, age 94, left hemisphere 51.0
Nucleus of the diagonal band
nTPM: 53.5
2775 Male, age 80, right hemisphere 54.5
1979 Male, age 74, unknown 54.0
1812 Female, age 91, both hemispheres 53.5
2195 Female, age 85, both hemispheres 53.2
2029 Male, age 61, right hemisphere 52.4
Olfactory tubercle
nTPM: 52.1
1846 Male, age 80, right hemisphere 53.5
2856 Male, age 75, right hemisphere 51.8
1998 Female, age 91, both hemispheres 51.6
2487 Female, age 94, left hemisphere 51.5
Putamen
nTPM: 53.1
1829 Male, age 74, unknown 55.2
2482 Female, age 94, left hemisphere 54.5
2466 Female, age 79, unknown 53.1
2647 Male, age 75, left hemisphere 52.7
1937 Female, age 91, right hemisphere 52.6
2489 Female, age 72, unknown 52.0
1838 Male, age 80, right hemisphere 51.4
Septal nuclei
nTPM: 51.9
1960 Male, age 74, unknown 54.5
2031 Female, age 72, unknown 53.6
2009 Female, age 91, both hemispheres 51.9
2629 Female, age 94, right hemisphere 51.6
2199 Male, age 80, right hemisphere 51.2
2059 Female, age 85, both hemispheres 51.1
2394 Male, age 61, left hemisphere 49.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 67.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 62.7
Samples: 246

Max nTPM: 101.7
Min nTPM: 39.8
Std nTPM: 9.3
Median nTPM: 61.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 101.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 97.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 95.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 95.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 94.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 94.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 85.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 83.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 81.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 80.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 80.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 66.2
Samples: 246

Max nTPM: 105.3
Min nTPM: 40.1
Std nTPM: 9.2
Median nTPM: 65.4
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 105.3
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 99.2
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 88.6
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 88.5
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 88.1
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 86.7
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 86.6
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 85.1
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 83.8
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 83.6
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 83.6
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Brain - Putamen (basal ganglia)
Average nTPM: 67.5
Samples: 205

Max nTPM: 119.2
Min nTPM: 51.0
Std nTPM: 9.6
Median nTPM: 65.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 119.2
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 98.7
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 91.5
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 90.9
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 89.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 89.7
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 89.1
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 88.4
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 87.4
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 87.1
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 85.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 129.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 120.3
FF:10164-103B2 76 years, female 120.3
Globus pallidus
Scaled Tags Per Million: 113.4
FF:10161-103A8 76 years, female 127.3
FF:10175-103C4 60 years, female 99.4
Nucleus accumbens
Scaled Tags Per Million: 110.6
FF:10037-101F1 23-56 years, mixed 110.6
Putamen
Scaled Tags Per Million: 129.3
FF:10176-103C5 60 years, female 129.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 17.5
Pig sample Sample description nTPM
Caudate
nTPM: 17.5
Samples: 4

Max nTPM: 21.2
Min nTPM: 16.0
Sample A Female 16.8
Sample B Female 16.0
Sample C Male 21.2
Sample D Male 16.1
Putamen
nTPM: 17.5
Samples: 4

Max nTPM: 23.6
Min nTPM: 14.0
Sample A Female 14.0
Sample B Female 15.4
Sample C Male 23.6
Sample D Male 17.1
Septum
nTPM: 16.6
Samples: 4

Max nTPM: 17.8
Min nTPM: 14.7
Sample A Female 17.8
Sample B Female 14.7
Sample C Male 16.5
Sample D Male 17.2
Ventral pallidum
nTPM: 15.3
Samples: 4

Max nTPM: 17.4
Min nTPM: 13.1
Sample A Female 17.4
Sample B Female 16.8
Sample C Male 13.1
Sample D Male 14.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 59.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 59.1
Samples: 4

Max nTPM: 63.3
Min nTPM: 56.4
Sample A Male 59.7
Sample B Male 56.4
Sample C Female 63.3
Sample D Female 56.9
Septum
nTPM: 56.2
Samples: 4

Max nTPM: 59.8
Min nTPM: 52.6
Sample A Male 57.6
Sample B Male 52.6
Sample C Female 54.7
Sample D Female 59.8
Ventral forebrain
nTPM: 55.0
Samples: 4

Max nTPM: 57.1
Min nTPM: 53.1
Sample A Male 53.1
Sample B Male 57.1
Sample C Female 54.3
Sample D Female 55.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 13.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 13.3
67936203 Antisense, RP_041102_01_A12, Mouse strain C57BL/6J (56 days, male) 13.3
68203452 Antisense, RP_041102_01_A12, Mouse strain C57BL/6J (56 days, male) 8.8
Pallidum
Expression energy: 12.5
67936203 Antisense, RP_041102_01_A12, Mouse strain C57BL/6J (56 days, male) 12.5
68203452 Antisense, RP_041102_01_A12, Mouse strain C57BL/6J (56 days, male) 7.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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