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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average FPKM
1414.0
Number of samples
365
Samples
Sample
Description
FPKM
TCGA-G3-A25U-01A
63 years, female, asian, stage:i, alive, 1636 days
16142.7
TCGA-QA-A7B7-01A
48 years, male, black or african american, stage:ii, alive, 94 days
9129.7
TCGA-DD-A4NV-01A
61 years, male, white, stage:iiia, alive, 2398 days
7660.3
TCGA-2Y-A9GZ-01A
82 years, female, white, stage:ii, dead, 848 days
6982.6
TCGA-FV-A496-01A
84 years, female, white, stage:i, alive, 10 days
6809.7
TCGA-ZS-A9CF-01A
64 years, male, white, stage:ii, alive, 2412 days
6115.9
TCGA-MR-A520-01A
58 years, male, white, stage:i, alive, 229 days
5790.4
TCGA-ZS-A9CE-01A
79 years, female, white, stage:ii, alive, 1241 days
5646.5
TCGA-DD-A118-01A
77 years, female, white, stage:ii, alive, 3437 days
5613.7
TCGA-G3-AAUZ-01A
48 years, male, stage:i, alive, 480 days
5529.2
TCGA-G3-A5SI-01A
44 years, male, asian, stage:ii, dead, 768 days
5446.3
TCGA-DD-AAE2-01A
51 years, male, asian, stage:i, alive, 638 days
4949.7
TCGA-G3-A25Z-01A
58 years, male, asian, stage:i, alive, 655 days
4929.1
TCGA-DD-A4NE-01A
75 years, female, white, stage:iiia, dead, 660 days
4923.3
TCGA-BC-A3KF-01A
66 years, female, white, stage:i, alive, 8 days
4654.3
TCGA-DD-AACE-01A
62 years, male, asian, stage:i, alive, 2184 days
4597.3
TCGA-G3-A3CI-01A
71 years, male, white, stage:i, alive, 180 days
4595.9
TCGA-NI-A4U2-01A
71 years, male, white, stage:iiia, dead, 1791 days
4534.4
TCGA-DD-A3A2-01A
76 years, female, white, stage:i, dead, 2131 days
4408.7
TCGA-DD-A73B-01A
72 years, female, white, stage:i, dead, 283 days
4386.7
TCGA-DD-A3A5-01A
66 years, female, white, stage:iii, dead, 3125 days
4349.3
TCGA-G3-A3CH-01A
53 years, male, asian, stage:iiia, alive, 780 days
4261.6
TCGA-DD-A4NK-01A
80 years, female, white, stage:iiia, dead, 1210 days
4092.8
TCGA-DD-AACF-01A
68 years, male, asian, stage:i, dead, 365 days
4056.4
TCGA-DD-AACY-01A
61 years, male, asian, stage:i, alive, 1450 days
3983.7
TCGA-DD-AAEH-01A
73 years, male, asian, stage:i, alive, 784 days
3888.3
TCGA-DD-A1EB-01A
72 years, female, stage:i, alive, 2017 days
3858.8
TCGA-G3-A7M5-01A
76 years, male, asian, stage:i, alive, 447 days
3783.2
TCGA-BC-A10Z-01A
62 years, female, white, stage:i, dead, 34 days
3706.4
TCGA-DD-AADF-01A
64 years, female, asian, stage:i, dead, 115 days
3694.9
TCGA-ED-A7PY-01A
20 years, female, asian, stage:ii, alive, 390 days
3688.5
TCGA-UB-A7MB-01A
24 years, male, white, stage:ii, alive, 601 days
3576.6
TCGA-DD-AAE4-01A
49 years, female, asian, stage:i, alive, 608 days
3528.5
TCGA-CC-A7IF-01A
59 years, male, asian, stage:iiia, dead, 649 days
3413.2
TCGA-DD-AADS-01A
63 years, male, asian, stage:i, alive, 474 days
3373.4
TCGA-DD-AADP-01A
45 years, male, asian, stage:i, alive, 458 days
3359.6
TCGA-G3-AAV0-01A
58 years, male, asian, stage:i, alive, 476 days
3325.8
TCGA-DD-A73C-01A
65 years, female, white, stage:iiia, alive, 701 days
3268.3
TCGA-2Y-A9H4-01A
68 years, male, black or african american, stage:i, alive, 1452 days
3244.8
TCGA-DD-A115-01A
53 years, male, white, stage:iiia, dead, 2542 days
3119.5
TCGA-G3-A7M8-01A
31 years, male, asian, stage:i, alive, 430 days
3104.8
TCGA-5R-AA1D-01A
17 years, female, white, stage:iiia, alive, 449 days
3099.8
TCGA-ED-A7XO-01A
29 years, male, asian, stage:iiia, alive, 427 days
3089.8
TCGA-2Y-A9H3-01A
45 years, male, white, stage:ii, alive, 1516 days
3085.4
TCGA-HP-A5N0-01A
88 years, female, dead, 1147 days
3069.2
TCGA-2Y-A9GV-01A
54 years, female, white, stage:i, dead, 2532 days
3027.1
TCGA-G3-A7M7-01A
65 years, male, white, stage:i, alive, 361 days
2912.5
TCGA-2Y-A9GU-01A
55 years, female, white, stage:i, alive, 1939 days
2877.3
TCGA-2Y-A9GT-01A
51 years, male, white, stage:i, dead, 1624 days
2867.7
TCGA-DD-AADA-01A
66 years, female, asian, stage:i, alive, 1233 days
2859.6
TCGA-UB-AA0V-01A
69 years, female, white, stage:i, alive, 314 days
2855.7
TCGA-DD-AACV-01A
53 years, male, asian, stage:i, alive, 1531 days
2837.9
TCGA-BD-A2L6-01A
69 years, male, white, alive, 1363 days
2834.7
TCGA-FV-A2QR-01A
male, white, stage:i, dead, 581 days
2783.5
TCGA-MI-A75E-01A
61 years, male, white, stage:iiic, alive, 507 days
2771.0
TCGA-DD-A73A-01A
71 years, male, white, stage:i, alive, 728 days
2715.9
TCGA-BC-A10W-01A
50 years, male, asian, dead, 91 days
2700.2
TCGA-DD-AADL-01A
58 years, male, asian, stage:i, alive, 636 days
2687.8
TCGA-ED-A4XI-01A
58 years, male, asian, stage:ii, alive, 819 days
2685.2
TCGA-RC-A7SB-01A
53 years, male, asian, stage:ii, alive, 588 days
2618.1
TCGA-BC-A10T-01A
76 years, male, white, dead, 837 days
2548.3
TCGA-G3-A5SM-01A
58 years, male, white, stage:ii, alive, 520 days
2534.8
TCGA-DD-AADJ-01A
70 years, female, asian, stage:i, alive, 1066 days
2469.1
TCGA-DD-AACQ-01A
50 years, male, asian, stage:ii, dead, 432 days
2460.3
TCGA-UB-A7MA-01A
62 years, female, white, stage:ii, alive, 848 days
2452.3
TCGA-BC-A8YO-01A
66 years, female, white, stage:iiic, alive, 562 days
2430.7
TCGA-K7-A5RF-01A
64 years, male, white, stage:i, alive, 631 days
2402.6
TCGA-DD-AACO-01A
40 years, male, asian, stage:i, alive, 1876 days
2359.0
TCGA-FV-A3R3-01A
38 years, female, white, stage:i, dead, 366 days
2340.6
TCGA-RC-A7S9-01A
47 years, female, asian, stage:i, alive, 640 days
2290.1
TCGA-XR-A8TC-01A
43 years, female, white, stage:i, alive, 1339 days
2268.4
TCGA-WX-AA46-01A
62 years, male, white, stage:ii, alive, 756 days
2256.3
TCGA-XR-A8TF-01A
74 years, male, white, stage:i, dead, 693 days
2234.4
TCGA-WJ-A86L-01A
68 years, female, white, stage:i, alive, 345 days
2208.0
TCGA-CC-A9FS-01A
55 years, male, asian, stage:ii, alive, 211 days
2169.5
TCGA-2Y-A9HB-01A
66 years, male, stage:i, alive, 260 days
2124.1
TCGA-DD-A4NL-01A
46 years, male, white, stage:i, alive, 1711 days
2118.4
TCGA-BC-A110-01A
51 years, female, black or african american, dead, 2116 days
2118.2
TCGA-GJ-A6C0-01A
75 years, female, white, stage:ii, dead, 31 days
2108.7
TCGA-DD-A73F-01A
77 years, female, white, stage:i, alive, 1085 days
2076.2
TCGA-BC-A10Y-01A
76 years, male, white, dead, 711 days
2054.5
TCGA-DD-AADR-01A
58 years, male, asian, stage:i, alive, 2028 days
2041.0
TCGA-DD-A11A-01A
67 years, male, black or african american, stage:i, alive, 79 days
2032.6
TCGA-BC-A10X-01A
52 years, female, white, stage:iiia, dead, 770 days
2012.2
TCGA-DD-AADV-01A
50 years, male, asian, stage:i, alive, 574 days
2000.0
TCGA-DD-AAEG-01A
59 years, female, asian, stage:i, alive, 719 days
1995.6
TCGA-K7-A5RG-01A
66 years, male, black or african american, stage:i, alive, 519 days
1989.5
TCGA-2Y-A9H9-01A
70 years, male, white, stage:i, alive, 697 days
1984.3
TCGA-4R-AA8I-01A
66 years, male, white, stage:ii, dead, 262 days
1967.9
TCGA-DD-AADM-01A
58 years, male, asian, stage:ii, dead, 12 days
1963.3
TCGA-DD-A3A4-01A
37 years, male, white, stage:iiia, dead, 612 days
1940.8
TCGA-DD-A113-01A
55 years, female, white, stage:ii, alive, 2425 days
1916.9
TCGA-DD-A4NJ-01A
54 years, female, white, stage:ii, alive, 928 days
1899.7
TCGA-KR-A7K2-01A
64 years, male, white, stage:i, alive, 829 days
1898.9
TCGA-G3-A5SK-01A
58 years, male, white, stage:i, alive, 744 days
1867.2
TCGA-K7-A6G5-01A
66 years, male, white, stage:i, alive, 512 days
1858.5
TCGA-KR-A7K8-01A
57 years, male, stage:i, alive, 906 days
1850.1
TCGA-ZP-A9CY-01A
66 years, female, white, alive, 782 days
1827.0
TCGA-BW-A5NO-01A
50 years, male, black or african american, stage:iiia, alive, 20 days
1821.5
TCGA-DD-A39X-01A
78 years, female, white, stage:i, dead, 1694 days
1818.4
TCGA-G3-AAV1-01A
51 years, male, asian, stage:iiic, dead, 359 days
1803.6
TCGA-DD-A11D-01A
57 years, female, white, stage:i, dead, 1560 days
1779.7
TCGA-ZP-A9CZ-01A
72 years, male, asian, alive, 706 days
1766.1
TCGA-CC-A3MC-01A
54 years, male, asian, stage:iiia, alive, 363 days
1748.9
TCGA-5R-AAAM-01A
65 years, female, white, stage:ii, dead, 46 days
1745.3
TCGA-DD-AACJ-01A
75 years, male, asian, stage:ii, alive, 2102 days
1714.8
TCGA-ES-A2HS-01A
80 years, male, white, stage:i, dead, 688 days
1714.1
TCGA-DD-AAVR-01A
44 years, male, asian, stage:i, alive, 2513 days
1700.9
TCGA-DD-AAD8-01A
73 years, female, asian, stage:i, alive, 1219 days
1695.2
TCGA-RC-A6M5-01A
20 years, female, white, stage:iva, alive, 15 days
1673.9
TCGA-LG-A9QD-01A
68 years, male, white, stage:iiia, alive, 366 days
1658.5
TCGA-DD-A119-01A
40 years, male, asian, stage:iv, dead, 223 days
1646.5
TCGA-MR-A8JO-01A
34 years, male, white, stage:i, alive, 330 days
1619.2
TCGA-EP-A2KB-01A
46 years, female, white, stage:i, dead, 596 days
1617.2
TCGA-G3-A25V-01A
68 years, male, white, stage:i, alive, 860 days
1617.0
TCGA-G3-A3CG-01A
80 years, male, white, stage:i, alive, 673 days
1571.9
TCGA-BC-A216-01A
62 years, female, white, stage:iiia, alive, 1351 days
1544.0
TCGA-UB-A7MF-01A
57 years, male, white, stage:iiia, dead, 214 days
1520.9
TCGA-CC-A8HU-01A
39 years, female, asian, stage:iiia, dead, 344 days
1520.6
TCGA-MI-A75G-01A
63 years, male, white, stage:ii, alive, 698 days
1518.9
TCGA-BC-4072-01B
74 years, female, white, stage:iiia, dead, 1490 days
1518.6
TCGA-RC-A7SF-01A
66 years, male, asian, stage:i, alive, 579 days
1510.4
TCGA-ZP-A9D1-01A
56 years, female, white, alive, 21 days
1508.4
TCGA-HP-A5MZ-01A
62 years, male, stage:i, dead, 91 days
1503.0
TCGA-DD-AADY-01A
55 years, female, asian, stage:i, alive, 555 days
1491.5
TCGA-BD-A3ER-01A
62 years, male, white, stage:ii, alive, 1115 days
1489.2
TCGA-BC-A112-01A
80 years, male, white, dead, 153 days
1481.7
TCGA-DD-AAE6-01A
59 years, female, asian, stage:i, alive, 141 days
1459.3
TCGA-ED-A627-01A
74 years, male, white, stage:i, alive, 423 days
1455.8
TCGA-G3-A6UC-01A
65 years, male, white, stage:iiib, alive, 671 days
1431.5
TCGA-DD-A4NI-01A
67 years, male, white, stage:ii, alive, 816 days
1420.8
TCGA-2Y-A9H0-01A
49 years, male, white, stage:iiia, alive, 3675 days
1415.6
TCGA-CC-5262-01A
67 years, male, asian, stage:iiic, dead, 103 days
1397.2
TCGA-FV-A495-01A
51 years, female, white, stage:ii, alive, 1 days
1391.7
TCGA-DD-AAE3-01A
50 years, male, asian, stage:i, alive, 566 days
1382.3
TCGA-DD-AAEI-01A
72 years, male, asian, stage:i, alive, 1531 days
1381.6
TCGA-DD-AAD2-01A
66 years, male, asian, stage:i, alive, 658 days
1380.3
TCGA-DD-AAW0-01A
54 years, male, asian, stage:i, alive, 2015 days
1356.2
TCGA-DD-A114-01A
42 years, male, black or african american, stage:ii, dead, 1149 days
1343.3
TCGA-DD-AAD3-01A
43 years, male, asian, stage:i, alive, 1295 days
1337.9
TCGA-ZP-A9D0-01A
67 years, female, black or african american, alive, 1091 days
1331.0
TCGA-ZS-A9CD-01A
73 years, male, white, stage:ii, dead, 1386 days
1314.9
TCGA-DD-AADG-01A
70 years, male, asian, stage:iiia, alive, 1145 days
1307.6
TCGA-DD-AAEA-01A
65 years, male, asian, stage:i, alive, 575 days
1297.5
TCGA-EP-A2KA-01A
52 years, female, white, stage:iiia, dead, 627 days
1293.4
TCGA-DD-A1EK-01A
64 years, female, white, stage:ivb, dead, 558 days
1285.3
TCGA-2Y-A9GX-01A
68 years, male, white, stage:i, alive, 2442 days
1276.8
TCGA-RC-A7SK-01A
59 years, male, asian, stage:i, alive, 472 days
1253.8
TCGA-O8-A75V-01A
54 years, male, stage:i, alive, 538 days
1241.7
TCGA-NI-A8LF-01A
74 years, male, white, stage:i, alive, 799 days
1237.1
TCGA-DD-AACS-01A
39 years, male, asian, stage:i, alive, 1804 days
1232.8
TCGA-DD-AACD-01A
48 years, male, asian, stage:i, dead, 381 days
1214.2
TCGA-BC-A5W4-01A
69 years, male, white, stage:iiia, dead, 547 days
1203.9
TCGA-DD-AAVW-01A
35 years, male, asian, stage:i, alive, 2317 days
1201.3
TCGA-XR-A8TD-01A
49 years, female, white, stage:iiib, alive, 1030 days
1195.8
TCGA-G3-A25Y-01A
52 years, female, asian, stage:i, dead, 452 days
1189.9
TCGA-GJ-A9DB-01A
68 years, male, white, stage:i, dead, 67 days
1188.9
TCGA-DD-A11B-01A
73 years, male, white, stage:i, dead, 14 days
1182.4
TCGA-DD-AAVS-01A
56 years, male, asian, stage:i, alive, 1823 days
1180.8
TCGA-DD-A4NB-01A
25 years, male, white, stage:i, alive, 989 days
1179.8
TCGA-BD-A3EP-01A
76 years, female, black or african american, stage:i, alive, 409 days
1159.1
TCGA-MI-A75I-01A
61 years, male, black or african american, alive, 630 days
1145.2
TCGA-DD-AAE7-01A
72 years, male, asian, stage:i, alive, 644 days
1139.3
TCGA-GJ-A3OU-01A
59 years, male, white, stage:i, alive, 879 days
1125.5
TCGA-LG-A6GG-01A
79 years, female, white, stage:ii, alive, 387 days
1103.8
TCGA-DD-AACK-01A
70 years, male, asian, stage:i, alive, 9 days
1099.3
TCGA-CC-A7IL-01A
61 years, male, asian, stage:iiia, dead, 278 days
1089.1
TCGA-2Y-A9H6-01A
68 years, female, white, stage:i, alive, 357 days
1027.0
TCGA-DD-AAEK-01A
51 years, male, asian, stage:ii, alive, 1067 days
1026.2
TCGA-2Y-A9GS-01A
58 years, male, white, dead, 724 days
1025.9
TCGA-DD-AAEB-01A
60 years, male, asian, stage:i, alive, 478 days
1021.8
TCGA-DD-AAW2-01A
69 years, male, asian, stage:i, alive, 1855 days
1021.2
TCGA-DD-AADQ-01A
59 years, male, asian, stage:ii, alive, 436 days
991.7
TCGA-DD-A4NO-01A
66 years, male, white, stage:i, alive, 2245 days
987.0
TCGA-3K-AAZ8-01A
65 years, male, black or african american, stage:iiib, alive, 396 days
973.7
TCGA-FV-A3R2-01A
75 years, male, white, stage:i, dead, 194 days
963.6
TCGA-DD-AAE1-01A
52 years, male, asian, stage:i, alive, 552 days
960.9
TCGA-G3-A3CK-01A
61 years, male, asian, stage:i, alive, 585 days
956.1
TCGA-DD-AACW-01A
43 years, male, asian, stage:i, alive, 1424 days
956.0
TCGA-5C-A9VG-01A
58 years, male, white, stage:ii, alive, 328 days
951.5
TCGA-DD-AADK-01A
68 years, female, asian, stage:ii, alive, 1049 days
951.0
TCGA-DD-A1ED-01A
68 years, male, white, stage:i, alive, 2301 days
932.6
TCGA-XR-A8TG-01A
59 years, male, white, stage:i, alive, 898 days
930.6
TCGA-FV-A2QQ-01A
80 years, male, white, stage:i, alive, 729 days
926.7
TCGA-G3-AAV2-01A
50 years, male, white, stage:i, alive, 372 days
920.8
TCGA-DD-AACT-01A
69 years, female, asian, stage:i, alive, 1562 days
919.0
TCGA-ES-A2HT-01A
54 years, male, black or african american, stage:i, dead, 438 days
917.2
TCGA-MI-A75H-01A
77 years, male, white, alive, 747 days
916.5
TCGA-WQ-AB4B-01A
62 years, male, white, stage:ii, alive, 395 days
910.5
TCGA-DD-AACG-01A
52 years, male, asian, stage:ii, dead, 469 days
909.8
TCGA-DD-A4ND-01A
56 years, female, white, stage:i, alive, 2746 days
906.6
TCGA-DD-A3A1-01A
65 years, male, stage:iiia, dead, 233 days
898.2
TCGA-DD-A3A3-01A
45 years, male, asian, stage:i, dead, 535 days
867.9
TCGA-FV-A23B-01A
70 years, female, white, stage:ii, dead, 1852 days
863.9
TCGA-UB-AA0U-01A
60 years, male, white, stage:ii, alive, 327 days
837.0
TCGA-DD-AACC-01A
61 years, male, asian, stage:i, dead, 1685 days
835.4
TCGA-DD-A4NS-01A
62 years, female, white, stage:i, dead, 2456 days
834.3
TCGA-WX-AA44-01A
64 years, female, white, stage:i, alive, 615 days
833.7
TCGA-BC-A10S-01A
81 years, male, white, dead, 1423 days
825.9
TCGA-DD-AAEE-01A
55 years, male, asian, stage:i, alive, 810 days
815.4
TCGA-DD-AAVV-01A
56 years, male, asian, stage:ii, alive, 2455 days
803.9
TCGA-DD-A4NQ-01A
60 years, male, white, stage:ii, dead, 373 days
795.2
TCGA-DD-AAVU-01A
46 years, male, asian, stage:ii, alive, 2202 days
793.2
TCGA-BC-A69I-01A
69 years, male, white, stage:i, alive, 387 days
789.8
TCGA-G3-A5SJ-01A
59 years, male, white, stage:i, alive, 698 days
788.5
TCGA-DD-AACI-01A
69 years, male, asian, stage:ii, alive, 1618 days
781.7
TCGA-PD-A5DF-01A
58 years, female, white, stage:iiib, dead, 639 days
780.6
TCGA-DD-A1EI-01A
46 years, male, asian, stage:i, alive, 183 days
772.5
TCGA-UB-A7ME-01A
51 years, male, asian, stage:i, alive, 486 days
768.5
TCGA-CC-A3MB-01A
36 years, male, asian, stage:iiia, dead, 315 days
767.7
TCGA-2Y-A9H8-01A
85 years, female, white, dead, 633 days
761.3
TCGA-T1-A6J8-01A
68 years, male, white, alive, 23 days
748.4
TCGA-UB-A7MC-01A
59 years, male, white, stage:iiia, alive, 500 days
739.1
TCGA-DD-A4NP-01A
32 years, male, white, stage:i, alive, 3308 days
736.6
TCGA-DD-A3A7-01A
67 years, male, stage:iiib, dead, 419 days
725.0
TCGA-CC-A8HT-01A
74 years, male, asian, stage:iiia, dead, 140 days
706.2
TCGA-ZP-A9D4-01A
64 years, female, white, alive, 395 days
705.0
TCGA-DD-AACN-01A
32 years, male, asian, stage:i, alive, 1302 days
684.8
TCGA-ZP-A9CV-01A
59 years, male, white, dead, 1088 days
682.8
TCGA-2Y-A9H5-01A
59 years, female, white, stage:i, dead, 555 days
680.1
TCGA-BC-A10R-01A
66 years, female, white, dead, 308 days
678.3
TCGA-G3-A25X-01A
73 years, male, asian, stage:ii, alive, 1779 days
677.6
TCGA-CC-5259-01A
60 years, female, asian, stage:iiic, alive, 250 days
664.5
TCGA-ED-A66Y-01A
51 years, female, asian, stage:iiia, dead, 296 days
659.9
TCGA-BC-A217-01A
75 years, female, white, stage:ii, dead, 1397 days
657.7
TCGA-KR-A7K0-01A
65 years, male, white, stage:i, dead, 65 days
648.4
TCGA-DD-AACH-01A
69 years, male, asian, stage:ii, dead, 195 days
638.3
TCGA-DD-AACU-01A
59 years, male, asian, stage:i, alive, 1567 days
637.4
TCGA-DD-A73G-01A
73 years, female, white, stage:i, alive, 3478 days
627.4
TCGA-ED-A8O6-01A
50 years, female, asian, stage:iiia, dead, 56 days
626.4
TCGA-5C-AAPD-01A
61 years, male, asian, stage:ii, alive, 20 days
625.8
TCGA-K7-AAU7-01A
61 years, male, white, stage:ii, alive, 359 days
624.3
TCGA-DD-AAC9-01A
51 years, male, asian, stage:i, alive, 347 days
617.9
TCGA-UB-A7MD-01A
67 years, male, black or african american, stage:i, dead, 52 days
602.9
TCGA-ZS-A9CG-01A
55 years, male, white, stage:ii, alive, 341 days
577.4
TCGA-DD-AAD6-01A
66 years, male, asian, stage:iiia, alive, 672 days
574.1
TCGA-CC-A123-01A
24 years, female, asian, stage:iiia, alive, 219 days
563.8
TCGA-DD-A1EH-01A
23 years, male, white, stage:iii, alive, 1495 days
552.5
TCGA-G3-AAV5-01A
67 years, male, white, stage:ii, alive, 354 days
533.8
TCGA-DD-A11C-01A
69 years, male, white, stage:i, alive, 662 days
532.5
TCGA-DD-AAD0-01A
73 years, female, asian, stage:i, alive, 137 days
523.8
TCGA-ED-A8O5-01A
59 years, female, asian, stage:iiia, alive, 406 days
512.1
TCGA-DD-AAVX-01A
38 years, male, asian, stage:ii, alive, 1570 days
509.9
TCGA-WX-AA47-01A
33 years, female, white, stage:iiia, dead, 556 days
500.6
TCGA-2Y-A9H1-01A
58 years, male, white, stage:i, dead, 1229 days
500.1
TCGA-2Y-A9H7-01A
81 years, female, white, stage:i, alive, 1168 days
499.1
TCGA-2Y-A9GW-01A
64 years, male, white, stage:i, dead, 1271 days
496.7
TCGA-ED-A459-01A
47 years, male, asian, stage:ii, alive, 910 days
493.3
TCGA-DD-A3A8-01A
75 years, male, white, stage:ii, dead, 11 days
483.7
TCGA-ED-A97K-01A
54 years, male, asian, stage:iiia, alive, 6 days
481.1
TCGA-DD-AAVZ-01A
38 years, male, asian, stage:i, alive, 1900 days
476.2
TCGA-DD-A1EJ-01A
71 years, female, white, stage:iiic, dead, 1005 days
474.5
TCGA-EP-A3JL-01A
76 years, male, white, stage:i, alive, 303 days
457.7
TCGA-FV-A3I1-01A
female, white, stage:ii, dead, 247 days
440.9
TCGA-DD-AAW3-01A
69 years, male, asian, stage:i, alive, 1633 days
437.8
TCGA-DD-AAVY-01A
56 years, male, asian, stage:iiia, alive, 1970 days
431.4
TCGA-DD-A73D-01A
68 years, female, white, stage:ii, alive, 693 days
420.8
TCGA-CC-5264-01A
71 years, male, asian, stage:iiia, dead, 102 days
416.3
TCGA-CC-A5UC-01A
63 years, male, asian, stage:iiia, dead, 347 days
403.7
TCGA-DD-AADI-01A
43 years, female, asian, stage:i, alive, 1085 days
403.5
TCGA-DD-A4NR-01A
85 years, female, white, stage:i, dead, 9 days
400.1
TCGA-G3-A25S-01A
64 years, male, white, stage:i, dead, 416 days
400.1
TCGA-G3-A7M6-01A
60 years, female, white, stage:i, alive, 632 days
398.5
TCGA-2Y-A9H2-01A
64 years, female, white, stage:i, alive, 1731 days
395.8
TCGA-BC-A3KG-01A
68 years, female, white, stage:ii, alive, 680 days
393.4
TCGA-G3-A5SL-01A
70 years, male, white, stage:ii, alive, 621 days
386.4
TCGA-CC-5258-01A
48 years, male, asian, stage:ii, dead, 129 days
377.2
TCGA-DD-AADW-01A
48 years, male, asian, stage:i, alive, 587 days
375.7
TCGA-CC-A8HS-01A
18 years, male, asian, stage:iiic, dead, 300 days
375.1
TCGA-ED-A7XP-01A
53 years, female, asian, stage:ii, alive, 400 days
358.6
TCGA-CC-5261-01A
44 years, male, asian, stage:ii, dead, 97 days
355.6
TCGA-DD-A1EA-01A
68 years, male, asian, stage:ii, alive, 2415 days
350.0
TCGA-RC-A7SH-01A
42 years, male, asian, stage:ii, alive, 468 days
338.6
TCGA-DD-AAW1-01A
55 years, male, asian, stage:iiia, alive, 1989 days
317.6
TCGA-RC-A6M4-01A
74 years, female, white, stage:iiia, alive, 22 days
311.0
TCGA-EP-A2KC-01A
62 years, male, black or african american, stage:i, dead, 19 days
305.4
TCGA-DD-A3A9-01A
64 years, female, white, stage:ivb, dead, 931 days
302.5
TCGA-2Y-A9HA-01A
70 years, male, white, stage:ii, dead, 36 days
297.8
TCGA-DD-AADO-01A
55 years, male, asian, stage:i, alive, 453 days
296.7
TCGA-CC-A7IE-01A
57 years, male, asian, stage:iiia, dead, 217 days
295.9
TCGA-WQ-A9G7-01A
female, white, alive, 30 days
293.3
TCGA-2Y-A9GY-01A
64 years, female, white, stage:ii, dead, 757 days
283.8
TCGA-DD-AACX-01A
66 years, male, asian, stage:ii, alive, 170 days
280.4
TCGA-DD-A1EG-01A
77 years, male, white, stage:i, dead, 1372 days
275.0
TCGA-DD-AAD1-01A
51 years, female, asian, stage:i, alive, 564 days
261.8
TCGA-DD-A1EF-01A
57 years, female, white, stage:i, dead, 394 days
253.9
TCGA-5C-A9VH-01A
70 years, male, white, stage:i, alive, 322 days
239.6
TCGA-CC-A7IK-01A
59 years, male, asian, stage:iiia, dead, 262 days
237.0
TCGA-DD-A39Z-01A
43 years, female, stage:ii, dead, 601 days
233.2
TCGA-DD-A73E-01A
66 years, male, white, stage:i, alive, 44 days
224.0
TCGA-DD-AAVP-01A
48 years, male, asian, stage:i, alive, 2752 days
219.6
TCGA-DD-AAED-01A
51 years, male, asian, stage:i, alive, 763 days
214.5
TCGA-DD-AAVQ-01A
38 years, male, asian, stage:i, alive, 2728 days
212.1
TCGA-MI-A75C-01A
64 years, male, white, stage:i, alive, 291 days
203.7
TCGA-RG-A7D4-01A
69 years, male, black or african american, stage:ii, alive, 1098 days
197.7
TCGA-DD-A4NG-01A
77 years, male, white, stage:iiia, dead, 802 days
190.0
TCGA-FV-A4ZQ-01A
52 years, male, white, stage:i, alive, 12 days
186.2
TCGA-YA-A8S7-01A
69 years, male, white, stage:iiia, dead, 412 days
185.1
TCGA-EP-A26S-01A
70 years, male, white, stage:i, alive, 608 days
183.0
TCGA-DD-AACA-01A
65 years, male, asian, stage:i, alive, 2301 days
178.1
TCGA-DD-A116-01A
68 years, male, asian, stage:iiia, dead, 1622 days
168.9
TCGA-BC-4073-01B
73 years, male, white, stage:iiia, alive, 849 days
160.5
TCGA-DD-AACP-01A
65 years, male, asian, stage:i, alive, 415 days
158.1
TCGA-CC-A7IH-01A
58 years, male, asian, stage:iiia, alive, 365 days
157.6
TCGA-CC-A3MA-01A
61 years, male, asian, stage:iiia, dead, 303 days
155.1
TCGA-BC-A10U-01A
69 years, male, white, dead, 837 days
152.2
TCGA-BC-A69H-01A
64 years, male, white, stage:ii, alive, 444 days
149.8
TCGA-CC-5263-01A
35 years, male, asian, stage:iiia, dead, 129 days
147.6
TCGA-ED-A5KG-01A
60 years, female, asian, stage:ii, alive, 854 days
125.3
TCGA-DD-AADU-01A
60 years, male, asian, stage:ii, alive, 554 days
124.2
TCGA-5R-AA1C-01A
57 years, male, white, stage:ii, alive, 520 days
117.7
TCGA-FV-A4ZP-01A
78 years, male, white, stage:iiia, dead, 2486 days
117.0
TCGA-DD-A4NN-01A
56 years, female, white, stage:i, dead, 899 days
115.1
TCGA-EP-A12J-01A
63 years, male, black or african american, stage:i, alive, 570 days
114.7
TCGA-G3-A25T-01A
45 years, female, white, stage:iiia, alive, 1553 days
111.1
TCGA-DD-A4NF-01A
72 years, male, white, stage:i, alive, 942 days
105.5
TCGA-G3-A3CJ-01A
52 years, male, american indian or alaska native, stage:ii, alive, 594 days
101.3
TCGA-DD-AACL-01A
66 years, female, asian, stage:i, dead, 107 days
99.6
TCGA-DD-AACZ-01A
63 years, female, asian, stage:i, dead, 171 days
94.1
TCGA-G3-AAV3-01A
58 years, female, white, stage:ii, alive, 412 days
87.1
TCGA-CC-A8HV-01A
51 years, female, asian, stage:ii, dead, 279 days
86.8
TCGA-DD-A1EE-01A
73 years, male, white, stage:iiia, dead, 349 days
85.2
TCGA-DD-A39Y-01A
67 years, male, asian, stage:i, dead, 171 days
83.3
TCGA-ZP-A9D2-01A
51 years, male, white, dead, 765 days
82.2
TCGA-EP-A3RK-01A
73 years, male, white, stage:iiia, alive, 363 days
71.9
TCGA-DD-AADC-01A
53 years, male, asian, stage:i, dead, 425 days
69.9
TCGA-ED-A7PZ-01A
61 years, male, asian, stage:ii, alive, 6 days
69.3
TCGA-G3-AAV7-01A
38 years, male, asian, stage:ii, alive, 361 days
65.1
TCGA-CC-A5UE-01A
48 years, male, asian, stage:iiib, dead, 272 days
63.2
TCGA-DD-AADB-01A
51 years, male, asian, stage:i, alive, 1242 days
63.1
TCGA-DD-A4NH-01A
65 years, female, white, stage:iiib, alive, 917 days
59.8
TCGA-DD-AADD-01A
51 years, male, asian, stage:i, alive, 1231 days
56.5
TCGA-KR-A7K7-01A
61 years, female, white, stage:ii, alive, 951 days
55.2
TCGA-ED-A66X-01A
35 years, male, asian, stage:iiia, alive, 406 days
53.9
TCGA-DD-AADN-01A
59 years, male, asian, stage:i, alive, 898 days
53.4
TCGA-DD-AACB-01A
74 years, female, asian, stage:i, alive, 2324 days
48.3
TCGA-G3-AAV4-01A
83 years, female, white, stage:i, dead, 27 days
47.9
TCGA-DD-AAE0-01A
45 years, female, asian, stage:iiia, alive, 555 days
46.9
TCGA-CC-A7IG-01A
47 years, male, asian, stage:ii, dead, 299 days
44.0
TCGA-DD-AAE9-01A
69 years, male, asian, stage:i, alive, 722 days
43.9
TCGA-G3-AAV6-01A
53 years, female, white, stage:iiia, dead, 65 days
38.4
TCGA-RC-A6M6-01A
75 years, male, white, stage:ii, alive, 9 days
34.2
TCGA-ED-A7PX-01A
48 years, female, asian, stage:ii, alive, 6 days
32.7
TCGA-DD-A1EL-01A
23 years, male, black or african american, stage:ii, dead, 415 days
32.0
TCGA-DD-AA3A-01A
81 years, female, white, stage:i, dead, 410 days
29.4
TCGA-G3-A7M9-01A
70 years, male, white, stage:iiib, dead, 56 days
22.6
TCGA-DD-A39W-01A
29 years, female, white, stage:iii, dead, 827 days
21.6
TCGA-DD-A39V-01A
77 years, male, white, stage:ii, dead, 643 days
21.4
TCGA-DD-A1EC-01A
20 years, female, white, stage:i, alive, 602 days
21.1
TCGA-XR-A8TE-01A
16 years, male, white, stage:iiia, alive, 925 days
13.2
TCGA-CC-A1HT-01A
50 years, male, asian, stage:iiia, dead, 101 days
12.0
TCGA-CC-A9FW-01A
68 years, male, asian, stage:iiia, alive, 248 days
7.9
TCGA-CC-5260-01A
61 years, female, asian, stage:iiic, dead, 87 days
6.2
TCGA-LG-A9QC-01A
48 years, male, white, stage:i, alive, 425 days
5.9
TCGA-CC-A5UD-01A
45 years, male, asian, stage:iiia, dead, 304 days
5.6
TCGA-DD-A3A6-01A
72 years, female, white, stage:ii, dead, 3258 days
3.7
TCGA-DD-AAD5-01A
54 years, male, asian, stage:i, alive, 1345 days
3.6
TCGA-DD-AAC8-01A
72 years, male, asian, stage:i, dead, 16 days
2.1
TCGA-FV-A3I0-01A
76 years, female, white, stage:ii, alive, 848 days
2.0
TCGA-BC-A10Q-01A
72 years, female, white, dead, 1135 days
1.7
TCGA-DD-A4NA-01A
67 years, female, white, stage:iiic, alive, 1008 days
1.3
TCGA-ED-A82E-01A
60 years, female, asian, stage:iiia, alive, 408 days
1.3
TCGA-CC-A7II-01A
55 years, male, asian, stage:iiia, alive, 399 days
0.8
TCGA-CC-A3M9-01A
45 years, male, asian, stage:iiia, dead, 300 days
0.6
TCGA-CC-A7IJ-01A
56 years, male, asian, stage:ii, alive, 382 days
0.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
