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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:129.4 nTPM
HPA:129.4 nTPM
GTEx:153.9 nTPM
FANTOM5:123.5 Scaled Tags Per Million
Pig:71.0 nTPM
Mouse:259.8 nTPM
Allen mouse:14.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 129.4
Sample id Sample description nTPM
Amygdala
nTPM: 129.4
2695 Female, age 67, right hemisphere 133.6
2514 Male, age 75, right hemisphere 131.6
1987 Female, age 91, left hemisphere 130.0
2517 Female, age 94, left hemisphere 128.4
2814 Male, age 76, right hemisphere 123.2
Basal amygdala
nTPM: 124.8
2609 Male, age 75, right hemisphere 137.7
2243 Female, age 91, right hemisphere 133.3
2110 Male, age 80, left hemisphere 124.7
2685 Female, age 94, left hemisphere 122.5
1955 Male, age 76, both hemispheres 118.6
2827 Female, age 67, right hemisphere 112.1
Central amygdala
nTPM: 126.5
2515 Male, age 75, right hemisphere 134.6
2239 Male, age 80, left hemisphere 126.0
2701 Female, age 91, right hemisphere 125.3
2826 Female, age 94, left hemisphere 124.4
1905 Male, age 76, both hemispheres 122.4
Corticomedial amygdala
nTPM: 126.2
2428 Male, age 75, right hemisphere 134.1
2829 Male, age 80, left hemisphere 133.6
2429 Female, age 94, left hemisphere 128.9
2242 Female, age 91, right hemisphere 128.2
2240 Male, age 76, both hemispheres 118.9
2535 Female, age 67, right hemisphere 113.7
Lateral amygdala
nTPM: 121.5
2516 Male, age 75, right hemisphere 131.7
1883 Male, age 76, both hemispheres 125.0
2255 Female, age 91, right hemisphere 121.0
2534 Female, age 94, left hemisphere 120.2
2256 Male, age 80, left hemisphere 117.5
2830 Female, age 67, right hemisphere 113.4
Stria terminalis, bed nucleus
nTPM: 128.1
1974 Female, age 91, both hemispheres 137.9
2486 Female, age 94, both hemispheres 124.0
2201 Male, age 74, unknown 122.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 153.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 153.9
Samples: 152

Max nTPM: 417.7
Min nTPM: 86.6
Std nTPM: 52.5
Median nTPM: 145.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 417.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 416.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 349.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 308.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 305.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 279.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 261.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 232.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 228.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 223.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 221.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 219.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 217.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 215.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 215.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 214.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 202.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 194.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 193.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 190.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 190.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 184.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 183.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 183.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 182.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 182.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 179.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 178.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 177.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 176.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 175.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 175.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 175.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 173.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 173.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 172.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 172.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 172.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 170.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 169.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 168.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 168.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 168.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 166.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 164.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 164.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 164.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 164.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 163.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 163.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 163.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 163.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 163.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 161.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 160.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 160.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 159.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 158.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 156.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 156.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 156.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 155.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 153.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 153.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 152.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 152.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 149.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 149.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 148.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 147.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 147.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 146.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 146.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 145.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 145.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 145.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 144.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 144.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 143.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 142.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 142.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 142.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 141.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 139.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 138.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 138.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 137.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 137.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 135.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 135.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 135.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 133.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 133.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 133.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 132.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 132.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 131.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 131.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 131.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 130.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 129.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 129.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 128.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 128.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 127.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 127.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 126.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 125.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 124.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 124.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 123.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 123.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 123.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 121.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 117.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 115.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 115.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 114.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 114.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 113.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 113.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 112.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 112.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 112.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 112.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 111.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 111.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 110.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 110.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 110.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 108.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 108.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 107.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 105.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 105.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 105.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 104.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 104.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 104.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 104.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 103.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 102.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 102.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 101.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 99.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 98.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 97.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 96.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 94.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 93.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 90.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 86.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 123.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 123.5
FF:10151-102I7 76 years, female 123.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 71.0
Pig sample Sample description nTPM
Amygdala
nTPM: 71.0
Samples: 4

Max nTPM: 100.3
Min nTPM: 57.8
Sample A Female 100.3
Sample B Female 64.4
Sample C Male 57.8
Sample D Male 61.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 259.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 259.8
Samples: 4

Max nTPM: 278.4
Min nTPM: 245.8
Sample A Male 265.0
Sample B Male 278.4
Sample C Female 245.8
Sample D Female 250.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 14.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 14.9
69014818 Antisense, RP_050310_01_G07, Mouse strain C57BL/6J (56 days, male) 14.9

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