MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:149.8 nTPM
HPA:149.8 nTPM
GTEx:229.2 nTPM
FANTOM5:267.3 Scaled Tags Per Million
Mouse:60.3 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 149.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 133.1
2666 Male, age 74, left hemisphere 150.6
1830 Male, age 51, unknown 142.7
1870 Female, age 42, unknown 141.2
1833 Male, age 53, unknown 139.8
2828 Female, age 72, unknown 134.4
2586 Male, age 75, left hemisphere 133.7
2411 Female, age 72, unknown 127.3
2019 Male, age 18, unknown 123.9
1827 Male, age 72, unknown 121.7
2219 Male, age 76, both hemispheres 115.6
Dorsal raphe nucleus
nTPM: 117.7
2016 Female, age 72, unknown 131.0
2750 Male, age 76, both hemispheres 127.4
1828 Male, age 53, unknown 118.1
2047 Male, age 72, unknown 107.5
2298 Female, age 72, unknown 104.4
Inferior colliculus
nTPM: 114.6
2849 Male, age 72, unknown 123.7
1890 Male, age 53, unknown 118.8
1848 Female, age 42, unknown 113.3
2097 Female, age 72, unknown 102.6
Median raphe nucleus
nTPM: 126.9
2220 Male, age 76, midline 126.9
Pedunculopontine tegmental nucleus
nTPM: 128.7
2338 Male, age 61, both hemispheres 137.9
2334 Male, age 80, both hemispheres 134.9
1921 Female, age 85, both hemispheres 113.3
Periaquaductal grey, anterior
nTPM: 116.7
2502 Female, age 75, unknown 125.0
1795 Male, age 51, unknown 113.1
1947 Male, age 18, unknown 112.0
Periaquaductal grey, dorsal
nTPM: 121.2
2850 Male, age 76, both hemispheres 135.4
1831 Male, age 72, unknown 125.5
2464 Female, age 72, unknown 119.9
1840 Male, age 53, unknown 103.8
Periaquaductal grey, lateral
nTPM: 117.3
2140 Male, age 76, both hemispheres 124.9
2053 Male, age 18, unknown 122.6
2272 Male, age 74, both hemispheres 104.3
Pretectal area
nTPM: 116.6
1815 Male, age 53, unknown 133.0
2407 Male, age 75, both hemispheres 126.6
2316 Male, age 76, right hemisphere 123.4
2825 Male, age 18, unknown 122.9
1817 Female, age 42, unknown 118.8
2007 Male, age 72, unknown 113.4
2667 Female, age 75, unknown 112.1
1816 Male, age 51, unknown 109.6
2224 Female, age 72, unknown 109.5
1944 Female, age 72, unknown 108.6
2273 Male, age 74, both hemispheres 105.0
Red nucleus
nTPM: 149.8
2503 Female, age 72, unknown 180.5
2588 Male, age 74, left hemisphere 161.1
1865 Male, age 51, unknown 155.3
1904 Male, age 53, unknown 155.0
2725 Female, age 75, unknown 149.0
2227 Male, age 72, unknown 145.8
1954 Female, age 42, unknown 144.9
1821 Female, age 72, unknown 144.8
2769 Male, age 72, unknown 144.2
2823 Male, age 76, right hemisphere 140.9
2584 Male, age 75, left hemisphere 139.7
2785 Male, age 18, unknown 136.5
Substantia nigra
nTPM: 124.5
2699 Male, age 18, unknown 148.4
2665 Male, age 74, both hemispheres 138.6
2590 Female, age 75, unknown 126.5
2583 Male, age 75, right hemisphere 125.0
1851 Male, age 51, unknown 123.6
2409 Female, age 72, unknown 120.3
1889 Female, age 72, unknown 117.3
1941 Male, age 53, unknown 117.2
2241 Male, age 72, unknown 115.1
1916 Female, age 42, unknown 113.0
Superior colliculus
nTPM: 126.9
1913 Female, age 42, unknown 155.1
1995 Male, age 72, unknown 153.8
2587 Male, age 74, left hemisphere 134.6
1839 Male, age 51, unknown 127.5
2664 Male, age 75, both hemispheres 121.5
2668 Female, age 75, unknown 118.0
1796 Male, age 53, unknown 117.5
2087 Female, age 72, unknown 114.5
1895 Male, age 76, right hemisphere 113.4
2261 Male, age 18, unknown 113.4
Ventral tegmental area
nTPM: 124.4
2223 Female, age 72, unknown 139.8
2021 Male, age 53, unknown 124.8
2218 Male, age 76, both hemispheres 123.6
1942 Male, age 51, unknown 121.3
1915 Female, age 42, unknown 120.0
2410 Female, age 72, unknown 117.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 229.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 229.2
Samples: 139

Max nTPM: 657.9
Min nTPM: 54.0
Std nTPM: 119.6
Median nTPM: 201.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 657.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 646.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 599.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 567.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 541.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 525.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 506.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 468.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 460.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 448.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 419.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 267.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 267.3
FF:10158-103A5 76 years, female 267.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 60.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 60.3
Samples: 4

Max nTPM: 62.3
Min nTPM: 58.3
Sample A Male 60.6
Sample B Male 58.3
Sample C Female 59.8
Sample D Female 62.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
71574416 Antisense, RP_050915_03_F09, Mouse strain C57BL/6J (56 days, male) 0.2

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