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MYC
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  • MYC
PROTEIN STRUCTURE
ANTIBODIES
AND
VALIDATION
Protein structures
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

MYC
Synonyms bHLHe39, c-Myc, MYCC
Gene descriptioni

Full gene name according to HGNC.

MYC proto-oncogene, bHLH transcription factor
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Read more
Cancer-related genes
Disease related genes
Human disease related genes
Transcription factors
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Read more
Intracellular,Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 8
Cytoband q24.21
Chromosome location (bp) 127735434 - 127742951
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

9
Ensembl ENSG00000136997 (version 103.38)
Entrez gene 4609
HGNC HGNC:7553
UniProt P01106 (UniProt - Evidence at protein level)
neXtProt NX_P01106
Antibodypedia MYC antibodies


PROTEIN STRUCTUREi

The Structure section provides predicted structures from the Alphafold protein structure database and available experimental structures from Protein Data Bank (PDB).

In the Structure drop-down menu all experimental structures from PDB are available for selection and display. The structures are displayed using the NGL Viewer and can be zoomed-in and rotated either manually or by checking the Autorotate box. The Color scheme can be selected to show the residue index, chain name or confidence score (as B-factors and pLDDT score for experimental and predicted structures, respectively). The positions for available antigen sequences in the structure are shown if Antigens is turned to ON, and the Variants slider can be used to show the positions of clinical and population variants.https://github.com/nglviewer/ngl

Read more

Predicted


Description: Structure prediction from Alphafold project. Structure version 2

# Chains: 1      # Clinical variants: 4      # Population variants: 249

Antigens:

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On

Variants:

Off
Clinical
Population

Color scheme:

Confidence
Residue index
Chain name

Autorotate:

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On



PROTEIN BROWSERi

The protein browser displays the antigen location on the target protein(s) and the features of the target protein. The tabs at the top of the protein view section can be used to switch between the different splice variants to which an antigen has been mapped.

At the top of the view, the position of the antigen (identified by the corresponding HPA identifier) is shown as a green bar. A yellow triangle on the bar indicates a <100% sequence identity to the protein target.

Below the antigens, the maximum percent sequence identity of the protein to all other proteins from other human genes is displayed, using a sliding window of 10 aa residues (HsID 10) or 50 aa residues (HsID 50). The region with the lowest possible identity is always selected for antigen design, with a maximum identity of 60% allowed for designing a single-target antigen (read more).

The curve in blue displays the predicted antigenicity i.e. the tendency for different regions of the protein to generate an immune response, with peak regions being predicted to be more antigenic.The curve shows average values based on a sliding window approach using an in-house propensity scale. (read more).

If a signal peptide is predicted by a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius (turquoise) and/or transmembrane regions (orange) are predicted by MDM, these are displayed.

Low complexity regions are shown in yellow and InterPro regions in green. Common (purple) and unique (grey) regions between different splice variants of the gene are also displayed (read more), and at the bottom of the protein view is the protein scale.
MYC-201
MYC-202
MYC-203
MYC-205
MYC-206
MYC-207
MYC-208
MYC-209
MYC-210


PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The ENSP identifier links to the Ensembl website protein summary, while the ENST identifier links to the Ensembl website transcript summary for the selected splice variant. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column. The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius) and the number of predicted transmembrane region(s) (according to MDM) are also reported.
Splice variant UniProt Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
MYC-201
ENSP00000259523
ENST00000259523
A0A0B4J1R1 [Direct mapping]
Myc proto-oncogene protein; V-myc myelocytomatosis viral oncogene homolog (Avian), isoform CRA_b
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Amplifications
   COSMIC Somatic Mutations
   COSMIC Translocations
Human disease related genes
   Cancers
   Head and neck cancers
   Cancers of the digestive system
   Cancers of the lung and pleura
   Skin cancers
   Cancers of soft tissues and bone
   Cancers of the breast and female genital organs
   Cancers of male genital organs
   Cancers of eye, brain, and central nervous system
   Cancers of haematopoietic and lymphoid tissues
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003700 [DNA-binding transcription factor activity]
GO:0005654 [nucleoplasm]
GO:0006355 [regulation of transcription, DNA-templated]
GO:0042025 [host cell nucleus]
Show all
257 aa
27.8 kDa
No 0
MYC-202
ENSP00000367207
ENST00000377970
P01106 [Direct mapping]
Myc proto-oncogene protein
A0A024R9L7 [Target identity:100%; Query identity:100%]
Myc proto-oncogene protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Transcription factors
   Basic domains
Cancer-related genes
   Candidate cancer biomarkers
   COSMIC somatic mutations in cancer genes
   COSMIC Amplifications
   COSMIC Somatic Mutations
   COSMIC Translocations
Disease related genes
Human disease related genes
   Cancers
   Head and neck cancers
   Cancers of the digestive system
   Cancers of the lung and pleura
   Skin cancers
   Cancers of soft tissues and bone
   Cancers of the breast and female genital organs
   Cancers of male genital organs
   Cancers of eye, brain, and central nervous system
   Cancers of haematopoietic and lymphoid tissues
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000082 [G1/S transition of mitotic cell cycle]
GO:0000122 [negative regulation of transcription by RNA polymerase II]
GO:0000165 [MAPK cascade]
GO:0000785 [chromatin]
GO:0000978 [RNA polymerase II cis-regulatory region sequence-specific DNA binding]
GO:0000981 [DNA-binding transcription factor activity, RNA polymerase II-specific]
GO:0001046 [core promoter sequence-specific DNA binding]
GO:0001227 [DNA-binding transcription repressor activity, RNA polymerase II-specific]
GO:0001228 [DNA-binding transcription activator activity, RNA polymerase II-specific]
GO:0001658 [branching involved in ureteric bud morphogenesis]
GO:0002053 [positive regulation of mesenchymal cell proliferation]
GO:0003677 [DNA binding]
GO:0003700 [DNA-binding transcription factor activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005730 [nucleolus]
GO:0006112 [energy reserve metabolic process]
GO:0006338 [chromatin remodeling]
GO:0006355 [regulation of transcription, DNA-templated]
GO:0006357 [regulation of transcription by RNA polymerase II]
GO:0006879 [cellular iron ion homeostasis]
GO:0006974 [cellular response to DNA damage stimulus]
GO:0007050 [cell cycle arrest]
GO:0007219 [Notch signaling pathway]
GO:0008134 [transcription factor binding]
GO:0008284 [positive regulation of cell population proliferation]
GO:0010332 [response to gamma radiation]
GO:0010468 [regulation of gene expression]
GO:0010628 [positive regulation of gene expression]
GO:0015671 [oxygen transport]
GO:0016579 [protein deubiquitination]
GO:0019221 [cytokine-mediated signaling pathway]
GO:0032204 [regulation of telomere maintenance]
GO:0032873 [negative regulation of stress-activated MAPK cascade]
GO:0032986 [protein-DNA complex disassembly]
GO:0032991 [protein-containing complex]
GO:0033613 [activating transcription factor binding]
GO:0034644 [cellular response to UV]
GO:0035690 [cellular response to drug]
GO:0042025 [host cell nucleus]
GO:0042493 [response to drug]
GO:0043066 [negative regulation of apoptotic process]
GO:0043280 [positive regulation of cysteine-type endopeptidase activity involved in apoptotic process]
GO:0044346 [fibroblast apoptotic process]
GO:0044877 [protein-containing complex binding]
GO:0045656 [negative regulation of monocyte differentiation]
GO:0045893 [positive regulation of transcription, DNA-templated]
GO:0045944 [positive regulation of transcription by RNA polymerase II]
GO:0046983 [protein dimerization activity]
GO:0048146 [positive regulation of fibroblast proliferation]
GO:0048147 [negative regulation of fibroblast proliferation]
GO:0050679 [positive regulation of epithelial cell proliferation]
GO:0051276 [chromosome organization]
GO:0051782 [negative regulation of cell division]
GO:0051973 [positive regulation of telomerase activity]
GO:0070371 [ERK1 and ERK2 cascade]
GO:0070491 [repressing transcription factor binding]
GO:0070848 [response to growth factor]
GO:0070888 [E-box binding]
GO:0071456 [cellular response to hypoxia]
GO:0090096 [positive regulation of metanephric cap mesenchymal cell proliferation]
GO:1904672 [regulation of somatic stem cell population maintenance]
GO:1904837 [beta-catenin-TCF complex assembly]
GO:1905643 [positive regulation of DNA methylation]
GO:2000573 [positive regulation of DNA biosynthetic process]
GO:2001022 [positive regulation of response to DNA damage stimulus]
Show all
439 aa
48.8 kDa
No 0
MYC-203
ENSP00000429441
ENST00000517291
H0YBG3 [Direct mapping]
Myc proto-oncogene protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Amplifications
   COSMIC Somatic Mutations
   COSMIC Translocations
Human disease related genes
   Cancers
   Head and neck cancers
   Cancers of the digestive system
   Cancers of the lung and pleura
   Skin cancers
   Cancers of soft tissues and bone
   Cancers of the breast and female genital organs
   Cancers of male genital organs
   Cancers of eye, brain, and central nervous system
   Cancers of haematopoietic and lymphoid tissues
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003700 [DNA-binding transcription factor activity]
GO:0006355 [regulation of transcription, DNA-templated]
GO:0042025 [host cell nucleus]
Show all
184 aa
20.5 kDa
No 0
MYC-205
ENSP00000430235
ENST00000524013
H0YBT0 [Direct mapping]
Myc proto-oncogene protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Amplifications
   COSMIC Somatic Mutations
   COSMIC Translocations
Human disease related genes
   Cancers
   Head and neck cancers
   Cancers of the digestive system
   Cancers of the lung and pleura
   Skin cancers
   Cancers of soft tissues and bone
   Cancers of the breast and female genital organs
   Cancers of male genital organs
   Cancers of eye, brain, and central nervous system
   Cancers of haematopoietic and lymphoid tissues
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003677 [DNA binding]
GO:0003700 [DNA-binding transcription factor activity]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0006355 [regulation of transcription, DNA-templated]
GO:0042025 [host cell nucleus]
GO:0046983 [protein dimerization activity]
Show all
453 aa
50.4 kDa
No 0
MYC-206
ENSP00000478887
ENST00000621592
A0A087WUS5 [Direct mapping]
Myc proto-oncogene protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Amplifications
   COSMIC Somatic Mutations
   COSMIC Translocations
Human disease related genes
   Cancers
   Head and neck cancers
   Cancers of the digestive system
   Cancers of the lung and pleura
   Skin cancers
   Cancers of soft tissues and bone
   Cancers of the breast and female genital organs
   Cancers of male genital organs
   Cancers of eye, brain, and central nervous system
   Cancers of haematopoietic and lymphoid tissues
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003677 [DNA binding]
GO:0003700 [DNA-binding transcription factor activity]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005739 [mitochondrion]
GO:0006355 [regulation of transcription, DNA-templated]
GO:0042025 [host cell nucleus]
GO:0046983 [protein dimerization activity]
Show all
454 aa
50.6 kDa
No 0
MYC-207
ENSP00000493145
ENST00000641036
Q16591 [Direct mapping]
Myc protein; Myc proto-oncogene protein; ORF 118
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Amplifications
   COSMIC Somatic Mutations
   COSMIC Translocations
Human disease related genes
   Cancers
   Head and neck cancers
   Cancers of the digestive system
   Cancers of the lung and pleura
   Skin cancers
   Cancers of soft tissues and bone
   Cancers of the breast and female genital organs
   Cancers of male genital organs
   Cancers of eye, brain, and central nervous system
   Cancers of haematopoietic and lymphoid tissues
Protein evidence (Ezkurdia et al 2014)
Show all
188 aa
21 kDa
No 0
MYC-208
ENSP00000493139
ENST00000641252
Q14899 [Direct mapping]
Myc proto-oncogene protein; Myc-related translation/localization regulatory factor; ORF 114
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Amplifications
   COSMIC Somatic Mutations
   COSMIC Translocations
Human disease related genes
   Cancers
   Head and neck cancers
   Cancers of the digestive system
   Cancers of the lung and pleura
   Skin cancers
   Cancers of soft tissues and bone
   Cancers of the breast and female genital organs
   Cancers of male genital organs
   Cancers of eye, brain, and central nervous system
   Cancers of haematopoietic and lymphoid tissues
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003729 [mRNA binding]
GO:0005515 [protein binding]
GO:0005635 [nuclear envelope]
GO:0005791 [rough endoplasmic reticulum]
GO:0008150 [biological_process]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0044195 [nucleoplasmic reticulum]
GO:0045727 [positive regulation of translation]
GO:0071074 [eukaryotic initiation factor eIF2 binding]
Show all
114 aa
12.5 kDa
No 1
MYC-209
ENSP00000499182
ENST00000651626
A0A494C1T8 [Direct mapping]
Myc proto-oncogene protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Amplifications
   COSMIC Somatic Mutations
   COSMIC Translocations
Human disease related genes
   Cancers
   Head and neck cancers
   Cancers of the digestive system
   Cancers of the lung and pleura
   Skin cancers
   Cancers of soft tissues and bone
   Cancers of the breast and female genital organs
   Cancers of male genital organs
   Cancers of eye, brain, and central nervous system
   Cancers of haematopoietic and lymphoid tissues
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003677 [DNA binding]
GO:0003700 [DNA-binding transcription factor activity]
GO:0005654 [nucleoplasm]
GO:0005730 [nucleolus]
GO:0006355 [regulation of transcription, DNA-templated]
GO:0042025 [host cell nucleus]
GO:0046983 [protein dimerization activity]
Show all
339 aa
37.5 kDa
No 0
MYC-210
ENSP00000499105
ENST00000652288
P01106 [Direct mapping]
Myc proto-oncogene protein
A0A024R9L7 [Target identity:100%; Query identity:100%]
Myc proto-oncogene protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Transcription factors
   Basic domains
Cancer-related genes
   Candidate cancer biomarkers
   COSMIC somatic mutations in cancer genes
   COSMIC Amplifications
   COSMIC Somatic Mutations
   COSMIC Translocations
Disease related genes
Human disease related genes
   Cancers
   Head and neck cancers
   Cancers of the digestive system
   Cancers of the lung and pleura
   Skin cancers
   Cancers of soft tissues and bone
   Cancers of the breast and female genital organs
   Cancers of male genital organs
   Cancers of eye, brain, and central nervous system
   Cancers of haematopoietic and lymphoid tissues
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000082 [G1/S transition of mitotic cell cycle]
GO:0000122 [negative regulation of transcription by RNA polymerase II]
GO:0000165 [MAPK cascade]
GO:0000785 [chromatin]
GO:0000978 [RNA polymerase II cis-regulatory region sequence-specific DNA binding]
GO:0000981 [DNA-binding transcription factor activity, RNA polymerase II-specific]
GO:0001046 [core promoter sequence-specific DNA binding]
GO:0001227 [DNA-binding transcription repressor activity, RNA polymerase II-specific]
GO:0001228 [DNA-binding transcription activator activity, RNA polymerase II-specific]
GO:0001658 [branching involved in ureteric bud morphogenesis]
GO:0002053 [positive regulation of mesenchymal cell proliferation]
GO:0003677 [DNA binding]
GO:0003700 [DNA-binding transcription factor activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005730 [nucleolus]
GO:0006112 [energy reserve metabolic process]
GO:0006338 [chromatin remodeling]
GO:0006355 [regulation of transcription, DNA-templated]
GO:0006357 [regulation of transcription by RNA polymerase II]
GO:0006879 [cellular iron ion homeostasis]
GO:0006974 [cellular response to DNA damage stimulus]
GO:0007050 [cell cycle arrest]
GO:0007219 [Notch signaling pathway]
GO:0008134 [transcription factor binding]
GO:0008284 [positive regulation of cell population proliferation]
GO:0010332 [response to gamma radiation]
GO:0010468 [regulation of gene expression]
GO:0010628 [positive regulation of gene expression]
GO:0015671 [oxygen transport]
GO:0016579 [protein deubiquitination]
GO:0019221 [cytokine-mediated signaling pathway]
GO:0032204 [regulation of telomere maintenance]
GO:0032873 [negative regulation of stress-activated MAPK cascade]
GO:0032986 [protein-DNA complex disassembly]
GO:0032991 [protein-containing complex]
GO:0033613 [activating transcription factor binding]
GO:0034644 [cellular response to UV]
GO:0035690 [cellular response to drug]
GO:0042025 [host cell nucleus]
GO:0042493 [response to drug]
GO:0043066 [negative regulation of apoptotic process]
GO:0043280 [positive regulation of cysteine-type endopeptidase activity involved in apoptotic process]
GO:0044346 [fibroblast apoptotic process]
GO:0044877 [protein-containing complex binding]
GO:0045656 [negative regulation of monocyte differentiation]
GO:0045893 [positive regulation of transcription, DNA-templated]
GO:0045944 [positive regulation of transcription by RNA polymerase II]
GO:0046983 [protein dimerization activity]
GO:0048146 [positive regulation of fibroblast proliferation]
GO:0048147 [negative regulation of fibroblast proliferation]
GO:0050679 [positive regulation of epithelial cell proliferation]
GO:0051276 [chromosome organization]
GO:0051782 [negative regulation of cell division]
GO:0051973 [positive regulation of telomerase activity]
GO:0070371 [ERK1 and ERK2 cascade]
GO:0070491 [repressing transcription factor binding]
GO:0070848 [response to growth factor]
GO:0070888 [E-box binding]
GO:0071456 [cellular response to hypoxia]
GO:0090096 [positive regulation of metanephric cap mesenchymal cell proliferation]
GO:1904672 [regulation of somatic stem cell population maintenance]
GO:1904837 [beta-catenin-TCF complex assembly]
GO:1905643 [positive regulation of DNA methylation]
GO:2000573 [positive regulation of DNA biosynthetic process]
GO:2001022 [positive regulation of response to DNA damage stimulus]
Show all
439 aa
48.8 kDa
No 0

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