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CCL21
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:498.8 nTPM
HPA:97.2 nTPM
GTEx:498.8 nTPM
FANTOM5:258.1 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA051210
Glandular cells Not detected


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 97.2
overview
Male, age 65
Small intestine sample 232
nTPM: 41.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 127.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 125.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 93.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 498.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 498.8
Samples: 187

Max nTPM: 6493.3
Min nTPM: 13.3
Std nTPM: 782.4
Median nTPM: 242.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 6493.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 3347.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 3344.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 2998.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 2892.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 2782.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 2705.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 2193.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 2188.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 2089.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 2031.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1725.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1697.8
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1632.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1566.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1467.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1448.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1421.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1314.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1288.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1283.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 1253.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1160.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1123.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1061.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 976.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 969.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 933.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 897.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 886.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 826.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 795.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 735.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 733.7
GTEX-1192X-2526-SM-59868 50-59 years, male 714.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 714.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 691.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 677.3
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 667.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 644.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 603.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 560.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 546.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 529.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 523.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 517.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 511.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 498.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 487.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 478.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 467.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 466.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 427.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 424.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 395.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 383.3
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 381.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 380.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 380.0
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 373.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 373.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 363.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 361.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 352.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 346.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 334.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 332.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 327.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 326.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 323.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 322.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 315.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 315.0
GTEX-144GM-1026-SM-79OKU 20-29 years, male 307.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 307.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 303.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 303.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 301.0
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 295.5
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 293.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 289.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 289.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 287.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 284.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 276.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 262.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 260.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 259.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 251.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 250.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 249.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 244.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 244.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 242.8
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 229.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 222.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 213.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 211.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 209.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 201.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 198.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 197.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 196.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 194.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 188.7
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 187.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 179.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 172.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 168.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 162.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 156.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 155.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 150.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 146.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 145.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 139.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 134.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 132.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 128.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 126.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 125.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 123.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 119.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 118.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 115.3
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 114.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 112.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 111.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 110.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 109.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 108.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 107.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 104.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 102.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 101.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 101.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 94.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 93.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 93.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 92.4
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 89.8
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 87.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 83.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 83.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 82.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 82.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 81.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 79.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 79.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 77.8
GTEX-13O61-1326-SM-5KM31 60-69 years, male 77.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 76.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 73.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 72.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 71.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 69.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 69.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 67.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 66.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 66.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 65.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 63.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 59.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 56.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 56.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 55.4
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 53.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 50.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 50.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 49.7
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 48.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 46.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 45.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 42.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 40.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 39.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 37.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 36.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 36.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 36.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 31.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 29.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 23.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 20.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 19.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 16.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 13.3
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 258.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 258.1
FF:10024-101D6 15,40,85 years, mixed 258.1

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