MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:42.5 nTPM
HPA:42.5 nTPM
GTEx:50.1 nTPM
FANTOM5:18.6 Scaled Tags Per Million
Mouse:44.4 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.1
2586 Male, age 75, left hemisphere 43.2
1827 Male, age 72, unknown 42.9
1870 Female, age 42, unknown 42.5
2828 Female, age 72, unknown 42.4
2019 Male, age 18, unknown 42.0
2411 Female, age 72, unknown 40.8
2666 Male, age 74, left hemisphere 40.8
1833 Male, age 53, unknown 39.9
1830 Male, age 51, unknown 39.3
2219 Male, age 76, both hemispheres 37.0
Dorsal raphe nucleus
nTPM: 41.7
2298 Female, age 72, unknown 44.0
2016 Female, age 72, unknown 42.1
1828 Male, age 53, unknown 41.5
2047 Male, age 72, unknown 41.4
2750 Male, age 76, both hemispheres 39.5
Inferior colliculus
nTPM: 40.4
2097 Female, age 72, unknown 41.8
1890 Male, age 53, unknown 41.4
1848 Female, age 42, unknown 40.0
2849 Male, age 72, unknown 38.5
Median raphe nucleus
nTPM: 37.8
2220 Male, age 76, midline 37.8
Pedunculopontine tegmental nucleus
nTPM: 39.9
2334 Male, age 80, both hemispheres 41.1
1921 Female, age 85, both hemispheres 40.6
2338 Male, age 61, both hemispheres 37.8
Periaquaductal grey, anterior
nTPM: 42.5
1795 Male, age 51, unknown 43.4
2502 Female, age 75, unknown 42.3
1947 Male, age 18, unknown 42.0
Periaquaductal grey, dorsal
nTPM: 40.4
1840 Male, age 53, unknown 41.0
1831 Male, age 72, unknown 40.6
2850 Male, age 76, both hemispheres 40.4
2464 Female, age 72, unknown 39.6
Periaquaductal grey, lateral
nTPM: 41.2
2053 Male, age 18, unknown 41.7
2272 Male, age 74, both hemispheres 41.4
2140 Male, age 76, both hemispheres 40.5
Pretectal area
nTPM: 41.5
2273 Male, age 74, both hemispheres 45.1
1944 Female, age 72, unknown 42.3
1817 Female, age 42, unknown 42.1
2007 Male, age 72, unknown 42.1
1816 Male, age 51, unknown 41.8
2667 Female, age 75, unknown 41.3
1815 Male, age 53, unknown 41.1
2825 Male, age 18, unknown 40.9
2224 Female, age 72, unknown 39.9
2316 Male, age 76, right hemisphere 39.9
2407 Male, age 75, both hemispheres 39.3
Red nucleus
nTPM: 42.4
2769 Male, age 72, unknown 44.6
2725 Female, age 75, unknown 44.4
1821 Female, age 72, unknown 44.3
2503 Female, age 72, unknown 43.4
2227 Male, age 72, unknown 43.0
1904 Male, age 53, unknown 42.8
1865 Male, age 51, unknown 42.4
1954 Female, age 42, unknown 42.4
2588 Male, age 74, left hemisphere 41.8
2823 Male, age 76, right hemisphere 40.4
2785 Male, age 18, unknown 40.1
2584 Male, age 75, left hemisphere 39.4
Substantia nigra
nTPM: 40.7
1851 Male, age 51, unknown 42.7
1889 Female, age 72, unknown 42.5
2699 Male, age 18, unknown 42.0
1916 Female, age 42, unknown 41.2
2665 Male, age 74, both hemispheres 41.2
2583 Male, age 75, right hemisphere 40.8
1941 Male, age 53, unknown 40.1
2590 Female, age 75, unknown 39.2
2409 Female, age 72, unknown 39.0
2241 Male, age 72, unknown 38.1
Superior colliculus
nTPM: 41.2
2664 Male, age 75, both hemispheres 43.6
2587 Male, age 74, left hemisphere 41.8
1796 Male, age 53, unknown 41.6
2087 Female, age 72, unknown 41.6
2261 Male, age 18, unknown 41.5
2668 Female, age 75, unknown 41.2
1995 Male, age 72, unknown 41.0
1913 Female, age 42, unknown 40.1
1895 Male, age 76, right hemisphere 40.0
1839 Male, age 51, unknown 39.7
Ventral tegmental area
nTPM: 40.5
1915 Female, age 42, unknown 42.5
2410 Female, age 72, unknown 42.0
1942 Male, age 51, unknown 40.4
2021 Male, age 53, unknown 39.9
2218 Male, age 76, both hemispheres 39.0
2223 Female, age 72, unknown 39.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 50.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.1
Samples: 139

Max nTPM: 110.3
Min nTPM: 22.0
Std nTPM: 14.5
Median nTPM: 48.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 110.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 109.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 89.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 86.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 82.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 81.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 75.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 72.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 71.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 70.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 70.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.6
FF:10158-103A5 76 years, female 18.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 44.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 44.4
Samples: 4

Max nTPM: 50.4
Min nTPM: 39.7
Sample A Male 50.4
Sample B Male 41.4
Sample C Female 39.7
Sample D Female 46.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
76003661 Antisense, RP_060608_03_A05, Mouse strain C57BL/6J (56 days, male) 1.2

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