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BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:258.8 nTPM
HPA:258.8 nTPM
GTEx:244.9 nTPM
FANTOM5:214.3 Scaled Tags Per Million
Pig:473.9 nTPM
Mouse:234.7 nTPM
Allen mouse:25.6 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA043640Antibody HPA046280
Glial cells Not detectedNot detected
Neuronal cells LowMedium




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 258.8
Sample id Sample description nTPM
Hippocampus
nTPM: 258.8
2529 Female, age 94, left hemisphere 328.6
1855 Male, age 76, left hemisphere 263.7
2148 Female, age 91, left hemisphere 246.8
2621 Female, age 67, right hemisphere 245.5
1898 Male, age 80, left hemisphere 239.3
1911 Female, age 85, right hemisphere 228.7
Dentate gyrus
nTPM: 233.5
2010 Male, age 76, both hemispheres 262.9
2246 Female, age 85, both hemispheres 251.9
2528 Male, age 74, both hemispheres 231.6
1927 Female, age 91, both hemispheres 224.7
2531 Female, age 67, both hemispheres 220.8
2530 Female, age 94, left hemisphere 208.9
Entorhinal gyrus
nTPM: 239.2
1938 Female, age 85, left hemisphere 258.5
1787 Male, age 76, left hemisphere 249.2
2117 Female, age 91, right hemisphere 249.2
2686 Male, age 75, right hemisphere 248.4
2764 Male, age 80, right hemisphere 223.2
2613 Female, age 94, left hemisphere 206.7
Hippocampus, CA1
nTPM: 242.9
2527 Male, age 74, both hemispheres 301.8
2082 Female, age 91, right hemisphere 246.6
2045 Male, age 76, both hemispheres 229.2
2749 Male, age 80, left hemisphere 223.0
1873 Female, age 85, both hemispheres 213.8
Hippocampus, CA2
nTPM: 236.2
2249 Male, age 74, both hemispheres 275.8
2113 Female, age 91, right hemisphere 253.8
2437 Female, age 94, left hemisphere 243.7
1940 Female, age 85, left hemisphere 219.8
1892 Male, age 76, both hemispheres 218.4
1963 Male, age 80, left hemisphere 205.7
Hippocampus, CA3
nTPM: 228.8
2137 Male, age 80, left hemisphere 242.9
2861 Female, age 67, both hemispheres 241.4
1867 Male, age 76, both hemispheres 236.0
2436 Male, age 74, both hemispheres 235.8
1891 Female, age 85, both hemispheres 218.1
2620 Female, age 94, left hemisphere 198.9
Parahippocampal cortex
nTPM: 256.4
2250 Female, age 67, right hemisphere 328.1
2692 Male, age 74, both hemispheres 281.0
1933 Female, age 85, both hemispheres 269.4
2245 Female, age 91, both hemispheres 265.0
2622 Female, age 67, right hemisphere 258.7
1990 Female, age 91, right hemisphere 245.7
2532 Female, age 72, left hemisphere 232.3
2693 Female, age 94, both hemispheres 230.9
1850 Male, age 80, both hemispheres 226.9
2018 Male, age 76, both hemispheres 225.8
Perirhinal gyrus
nTPM: 240.7
1847 Female, age 91, left hemisphere 262.5
2521 Female, age 94, right hemisphere 261.8
1794 Male, age 80, right hemisphere 234.7
1841 Female, age 85, right hemisphere 229.7
2848 Male, age 76, right hemisphere 214.8
Subiculum
nTPM: 248.3
2438 Female, age 94, left hemisphere 294.0
2619 Male, age 74, both hemispheres 262.1
2729 Female, age 91, right hemisphere 241.2
1977 Female, age 85, both hemispheres 236.1
2042 Male, age 76, both hemispheres 228.7
1901 Male, age 80, both hemispheres 227.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 244.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 244.9
Samples: 197

Max nTPM: 1374.0
Min nTPM: 46.4
Std nTPM: 164.8
Median nTPM: 206.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 1374.0
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 1029.7
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 728.3
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 695.3
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 685.8
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 661.8
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 649.0
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 609.3
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 605.4
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 603.7
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 565.7
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 539.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 511.9
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 486.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 479.2
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 463.6
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 461.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 454.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 451.6
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 435.2
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 398.9
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 389.6
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 384.7
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 383.7
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 379.8
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 371.8
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 369.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 363.5
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 358.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 357.7
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 356.0
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 347.4
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 346.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 346.5
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 345.2
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 345.1
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 338.4
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 330.8
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 329.3
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 317.6
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 306.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 305.2
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 303.9
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 303.9
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 302.6
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 301.7
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 301.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 297.3
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 295.7
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 293.9
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 293.9
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 287.8
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 287.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 283.1
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 280.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 270.7
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 270.4
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 266.8
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 266.6
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 263.4
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 262.6
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 258.3
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 256.6
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 252.9
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 250.1
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 248.4
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 247.4
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 241.8
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 240.0
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 235.9
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 235.9
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 234.1
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 232.6
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 232.0
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 231.3
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 230.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 229.0
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 227.0
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 226.4
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 224.6
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 222.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 221.2
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 220.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 220.1
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 219.1
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 218.1
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 216.9
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 214.6
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 214.3
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 213.3
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 211.1
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 211.1
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 210.2
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 210.0
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 208.6
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 207.8
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 207.5
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 206.3
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 206.2
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 205.9
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 205.2
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 204.1
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 201.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 197.0
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 195.7
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 195.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 194.2
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 193.0
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 192.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 191.9
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 191.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 189.0
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 187.8
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 184.6
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 184.2
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 181.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 181.8
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 179.0
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 178.7
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 176.8
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 175.5
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 174.5
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 173.9
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 171.7
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 170.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 169.9
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 169.4
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 168.9
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 168.7
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 166.3
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 166.3
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 165.4
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 162.6
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 162.0
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 161.5
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 161.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 159.5
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 159.0
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 155.2
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 154.2
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 152.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 152.0
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 151.6
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 151.4
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 150.4
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 149.8
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 149.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 148.4
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 148.0
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 147.8
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 145.9
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 142.8
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 141.3
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 138.3
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 136.9
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 136.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 134.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 131.6
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 129.1
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 126.8
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 126.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 125.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 124.7
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 124.1
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 124.0
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 123.7
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 122.4
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 122.3
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 121.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 119.1
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 119.0
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 118.2
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 117.2
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 115.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 113.8
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 112.8
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 111.0
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 109.1
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 108.9
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 107.5
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 106.7
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 105.2
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 105.2
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 105.0
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 101.5
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 96.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 95.7
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 89.8
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 86.9
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 80.5
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 74.1
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 60.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 59.8
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 59.3
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 59.2
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 54.2
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 46.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 214.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 214.3
FF:10153-102I9 76 years, female 233.0
FF:10169-103B7 60 years, female 195.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 473.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 433.4
Samples: 4

Max nTPM: 640.4
Min nTPM: 316.4
Sample A Female 640.4
Sample B Female 430.0
Sample C Male 346.7
Sample D Male 316.4
Entorhinal cortex
nTPM: 420.1
Samples: 4

Max nTPM: 487.4
Min nTPM: 348.9
Sample A Female 487.4
Sample B Female 382.8
Sample C Male 461.4
Sample D Male 348.9
Subiculum
nTPM: 474.0
Samples: 4

Max nTPM: 657.3
Min nTPM: 388.3
Sample A Female 657.3
Sample B Female 424.5
Sample C Male 425.7
Sample D Male 388.3
Ventral hippocampus
nTPM: 428.3
Samples: 4

Max nTPM: 538.4
Min nTPM: 315.9
Sample A Female 483.1
Sample B Female 315.9
Sample C Male 538.4
Sample D Male 375.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 234.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 191.9
Samples: 4

Max nTPM: 228.8
Min nTPM: 148.5
Sample A Male 182.0
Sample B Male 148.5
Sample C Female 228.8
Sample D Female 208.3
Hippocampal formation
nTPM: 234.7
Samples: 4

Max nTPM: 251.5
Min nTPM: 226.5
Sample A Male 231.0
Sample B Male 226.5
Sample C Female 229.6
Sample D Female 251.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 25.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 25.6
74819689 Antisense, RP_060315_02_H05, Mouse strain C57BL/6J (56 days, male) 27.0
69854163 Antisense, RP_050324_04_C01, Mouse strain C57BL/6J (56 days, male) 25.4
69838608 Antisense, RP_050310_02_C05, Mouse strain C57BL/6J (56 days, male) 24.5

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