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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:369.1 nTPM
HPA:369.1 nTPM
FANTOM5:162.8 Scaled Tags Per Million
Pig:448.4 nTPM
Mouse:123.1 nTPM
Allen mouse:25.9 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 369.1
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 262.8
2396 Male, age 61, right hemisphere 291.6
2497 Male, age 66, unknown 255.9
2032 Female, age 42, unknown 240.9
Centromedial thalamic nucleus
nTPM: 276.0
2401 Male, age 76, right hemisphere 303.6
2279 Female, age 85, left hemisphere 248.4
Habenula
nTPM: 259.9
2276 Male, age 66, unknown 282.4
1957 Male, age 80, both hemispheres 270.1
2252 Male, age 62, unknown 255.4
2203 Male, age 61, left hemisphere 231.6
Lateral geniculate body
nTPM: 295.9
2399 Male, age 61, left hemisphere 321.9
2857 Male, age 74, right hemisphere 314.0
2659 Male, age 66, unknown 312.9
2841 Male, age 80, both hemispheres 307.7
1953 Male, age 62, unknown 291.6
2035 Female, age 72, unknown 286.6
2106 Female, age 67, right hemisphere 279.9
2575 Female, age 94, right hemisphere 252.7
Lateral thalamic nuclei
nTPM: 270.2
2661 Female, age 72, unknown 288.2
1903 Male, age 76, left hemisphere 280.0
2765 Female, age 67, both hemispheres 274.2
2573 Female, age 94, left hemisphere 262.5
2577 Male, age 74, both hemispheres 246.1
Medial dorsal thalamic nucleus
nTPM: 279.7
1971 Male, age 61, right hemisphere 321.8
2572 Female, age 94, right hemisphere 308.4
1810 Male, age 48, unknown 305.1
2498 Male, age 66, unknown 302.7
1859 Male, age 76, both hemispheres 302.1
2576 Male, age 74, both hemispheres 294.7
2026 Male, age 62, unknown 273.2
2492 Male, age 75, right hemisphere 269.0
2039 Female, age 72, unknown 262.8
2660 Female, age 72, unknown 259.8
2402 Female, age 67, both hemispheres 248.8
2283 Male, age 80, right hemisphere 244.7
1930 Female, age 42, unknown 243.1
Medial geniculate body
nTPM: 282.9
2650 Female, age 94, left hemisphere 310.1
2217 Female, age 72, unknown 302.8
2571 Male, age 75, right hemisphere 292.2
2657 Male, age 74, right hemisphere 289.5
2207 Male, age 80, right hemisphere 279.3
2049 Male, age 76, both hemispheres 267.6
1811 Female, age 42, unknown 238.7
Nucleus reuniens
nTPM: 284.6
2205 Male, age 80, left hemisphere 339.5
2212 Female, age 67, left hemisphere 267.1
2210 Female, age 85, left hemisphere 247.1
Nucleus rhomboideus
nTPM: 247.9
2206 Male, age 80, both hemispheres 269.5
2280 Female, age 85, left hemisphere 240.6
2213 Female, age 67, left hemisphere 233.6
Posterior thalamic nucleus
nTPM: 310.9
2649 Female, age 94, both hemispheres 372.2
2266 Male, age 76, right hemisphere 306.5
2655 Male, age 74, right hemisphere 293.3
2495 Female, age 67, right hemisphere 271.5
Pulvinar
nTPM: 296.2
2398 Male, age 61, left hemisphere 332.3
2724 Male, age 74, right hemisphere 326.2
1972 Male, age 62, unknown 324.6
1932 Male, age 80, right hemisphere 317.4
2499 Male, age 66, unknown 291.2
2214 Male, age 76, right hemisphere 287.6
1899 Female, age 42, unknown 281.7
2496 Female, age 67, right hemisphere 268.2
1929 Male, age 48, unknown 267.7
2582 Female, age 72, unknown 264.8
Subthalamic nucleus
nTPM: 320.2
2282 Male, age 61, both hemispheres 369.3
2124 Male, age 62, unknown 362.0
2216 Male, age 48, unknown 329.8
2406 Female, age 72, unknown 324.7
2056 Female, age 72, unknown 321.4
2275 Male, age 66, unknown 312.8
2779 Female, age 42, unknown 307.6
2658 Male, age 74, both hemispheres 233.8
Ventral posterolateral thalamic nucleus
nTPM: 283.3
2740 Male, age 76, right hemisphere 342.5
2397 Male, age 61, right hemisphere 332.7
2197 Male, age 80, both hemispheres 284.9
2581 Female, age 72, unknown 266.6
2570 Male, age 75, right hemisphere 240.4
2578 Male, age 74, both hemispheres 232.7
Ventral posteromedial thalamic nucleus
nTPM: 292.5
2202 Male, age 61, left hemisphere 346.6
2127 Male, age 76, right hemisphere 331.0
2758 Male, age 80, both hemispheres 281.9
2653 Male, age 74, both hemispheres 256.4
2281 Male, age 75, right hemisphere 246.6
Ventral thalamic nuclei
nTPM: 290.6
2858 Female, age 72, unknown 330.2
1860 Male, age 76, both hemispheres 315.4
2204 Male, age 80, both hemispheres 307.1
2580 Male, age 66, unknown 291.7
2285 Male, age 62, unknown 289.2
2291 Female, age 72, unknown 285.9
1845 Male, age 48, unknown 277.8
2652 Male, age 74, left hemisphere 267.9
1912 Female, age 42, unknown 250.1
Ventromedial nucleus
nTPM: 369.1
1822 Female, age 42, unknown 384.5
1982 Female, age 72, unknown 353.7
Zona incerta
nTPM: 248.9
2208 Male, age 80, right hemisphere 281.1
2403 Male, age 62, unknown 263.5
2822 Male, age 74, right hemisphere 247.0
2215 Male, age 66, unknown 235.7
2663 Female, age 72, unknown 217.2

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 162.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 162.8
FF:10154-103A1 76 years, female 162.8

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 448.4
Pig sample Sample description nTPM
Thalamus
nTPM: 448.4
Samples: 4

Max nTPM: 752.0
Min nTPM: 273.7
Sample A Female 752.0
Sample B Female 273.7
Sample C Male 474.7
Sample D Male 293.2

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 123.1
Mouse sample Sample description nTPM
Thalamus
nTPM: 123.2
Samples: 4

Max nTPM: 142.2
Min nTPM: 112.2
Sample A Male 123.8
Sample B Male 114.5
Sample C Female 142.2
Sample D Female 112.2

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 25.9
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 25.9
74819689 Antisense, RP_060315_02_H05, Mouse strain C57BL/6J (56 days, male) 27.3
69854163 Antisense, RP_050324_04_C01, Mouse strain C57BL/6J (56 days, male) 26.0
69838608 Antisense, RP_050310_02_C05, Mouse strain C57BL/6J (56 days, male) 24.5

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