BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:102.8 nTPM
HPA:102.8 nTPM
GTEx:100.2 nTPM
FANTOM5:72.3 Scaled Tags Per Million
Mouse:363.7 nTPM
Allen mouse:3.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA039111
Glial cells Low
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 102.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 102.8
1857 Female, age 85, left hemisphere 107.0
2481 Female, age 94, left hemisphere 105.1
2846 Female, age 79, unknown 104.8
1854 Male, age 80, left hemisphere 104.7
2290 Female, age 72, unknown 102.9
1781 Male, age 74, unknown 101.2
2288 Male, age 75, left hemisphere 99.0
2289 Male, age 61, right hemisphere 97.6
Claustrum
nTPM: 96.6
2568 Male, age 61, both hemispheres 99.4
2491 Male, age 75, both hemispheres 98.2
2198 Male, age 80, both hemispheres 98.0
2284 Female, age 91, both hemispheres 97.8
2196 Female, age 79, unknown 97.5
1956 Male, age 74, unknown 96.6
2392 Female, age 94, both hemispheres 95.8
2645 Female, age 72, unknown 94.4
2292 Female, age 85, both hemispheres 92.1
Globus pallidus, externus
nTPM: 99.8
1996 Male, age 80, right hemisphere 102.9
2772 Female, age 79, unknown 101.7
2395 Male, age 75, both hemispheres 100.6
2646 Male, age 61, right hemisphere 98.0
2567 Female, age 72, unknown 96.0
Globus pallidus, internus
nTPM: 100.0
2483 Female, age 94, right hemisphere 104.1
2037 Male, age 80, right hemisphere 101.7
2287 Male, age 75, right hemisphere 101.7
1818 Male, age 74, unknown 100.8
2778 Female, age 91, both hemispheres 98.8
2566 Female, age 72, unknown 96.7
2111 Female, age 85, right hemisphere 96.0
Nucleus accumbens
nTPM: 102.6
1856 Female, age 91, right hemisphere 111.3
1806 Female, age 85, left hemisphere 104.9
1783 Male, age 74, unknown 103.9
2698 Female, age 72, unknown 101.7
2286 Male, age 75, left hemisphere 100.7
2824 Male, age 61, right hemisphere 100.4
2391 Female, age 94, left hemisphere 100.0
2732 Male, age 80, right hemisphere 97.6
Nucleus basalis of Meynert
nTPM: 99.3
2393 Male, age 80, right hemisphere 101.2
2569 Male, age 61, both hemispheres 100.5
2484 Female, age 94, left hemisphere 100.2
2821 Male, age 75, both hemispheres 95.2
Nucleus of the diagonal band
nTPM: 100.0
1812 Female, age 91, both hemispheres 102.3
2775 Male, age 80, right hemisphere 102.2
2195 Female, age 85, both hemispheres 99.2
1979 Male, age 74, unknown 98.9
2029 Male, age 61, right hemisphere 97.6
Olfactory tubercle
nTPM: 98.4
1846 Male, age 80, right hemisphere 100.8
1998 Female, age 91, both hemispheres 98.6
2856 Male, age 75, right hemisphere 97.9
2487 Female, age 94, left hemisphere 96.5
Putamen
nTPM: 100.4
1937 Female, age 91, right hemisphere 105.9
1838 Male, age 80, right hemisphere 103.2
2466 Female, age 79, unknown 101.6
2482 Female, age 94, left hemisphere 100.9
2489 Female, age 72, unknown 97.6
1829 Male, age 74, unknown 97.4
2647 Male, age 75, left hemisphere 96.0
Septal nuclei
nTPM: 98.9
2031 Female, age 72, unknown 101.3
2059 Female, age 85, both hemispheres 100.4
1960 Male, age 74, unknown 100.1
2199 Male, age 80, right hemisphere 99.2
2394 Male, age 61, left hemisphere 97.8
2009 Female, age 91, both hemispheres 97.0
2629 Female, age 94, right hemisphere 96.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 100.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 84.9
Samples: 246

Max nTPM: 241.0
Min nTPM: 39.2
Std nTPM: 25.0
Median nTPM: 81.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 241.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 182.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 179.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 154.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 151.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 149.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 149.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 142.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 141.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 139.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 133.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 100.2
Samples: 246

Max nTPM: 214.3
Min nTPM: 39.6
Std nTPM: 29.6
Median nTPM: 95.2
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 214.3
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 211.1
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 197.3
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 181.8
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 172.7
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 170.1
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 170.0
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 167.4
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 166.0
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 162.3
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 159.7
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Brain - Putamen (basal ganglia)
Average nTPM: 89.9
Samples: 205

Max nTPM: 194.4
Min nTPM: 43.0
Std nTPM: 23.3
Median nTPM: 87.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 194.4
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 154.3
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 154.2
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 152.9
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 147.8
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 146.1
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 139.3
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 138.8
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 137.2
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 135.8
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 133.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 72.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 72.3
FF:10164-103B2 76 years, female 72.3
Globus pallidus
Scaled Tags Per Million: 42.1
FF:10161-103A8 76 years, female 45.7
FF:10175-103C4 60 years, female 38.6
Nucleus accumbens
Scaled Tags Per Million: 37.7
FF:10037-101F1 23-56 years, mixed 37.7
Putamen
Scaled Tags Per Million: 69.4
FF:10176-103C5 60 years, female 69.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 363.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 334.7
Samples: 4

Max nTPM: 390.5
Min nTPM: 293.0
Sample A Male 329.2
Sample B Male 390.5
Sample C Female 293.0
Sample D Female 326.0
Septum
nTPM: 335.2
Samples: 4

Max nTPM: 373.3
Min nTPM: 306.7
Sample A Male 312.6
Sample B Male 373.3
Sample C Female 348.3
Sample D Female 306.7
Ventral forebrain
nTPM: 363.7
Samples: 4

Max nTPM: 472.5
Min nTPM: 308.7
Sample A Male 363.1
Sample B Male 308.7
Sample C Female 472.5
Sample D Female 310.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.8
68523348 Antisense, RP_050118_02_F01, Mouse strain C57BL/6J (56 days, male) 3.8
Pallidum
Expression energy: 3.7
68523348 Antisense, RP_050118_02_F01, Mouse strain C57BL/6J (56 days, male) 3.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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