MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:102.2 nTPM
HPA:102.2 nTPM
GTEx:87.3 nTPM
FANTOM5:40.6 Scaled Tags Per Million
Mouse:226.3 nTPM
Allen mouse:3.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 102.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 99.4
1827 Male, age 72, unknown 103.3
2586 Male, age 75, left hemisphere 101.9
2019 Male, age 18, unknown 101.8
2828 Female, age 72, unknown 101.1
1870 Female, age 42, unknown 99.8
1830 Male, age 51, unknown 98.2
2411 Female, age 72, unknown 97.3
2666 Male, age 74, left hemisphere 97.2
1833 Male, age 53, unknown 96.5
2219 Male, age 76, both hemispheres 96.3
Dorsal raphe nucleus
nTPM: 100.2
2047 Male, age 72, unknown 101.9
2298 Female, age 72, unknown 101.9
1828 Male, age 53, unknown 101.0
2750 Male, age 76, both hemispheres 98.6
2016 Female, age 72, unknown 97.6
Inferior colliculus
nTPM: 99.9
2097 Female, age 72, unknown 103.8
1890 Male, age 53, unknown 101.7
1848 Female, age 42, unknown 98.4
2849 Male, age 72, unknown 95.7
Median raphe nucleus
nTPM: 101.9
2220 Male, age 76, midline 101.9
Pedunculopontine tegmental nucleus
nTPM: 100.3
2338 Male, age 61, both hemispheres 101.4
2334 Male, age 80, both hemispheres 101.1
1921 Female, age 85, both hemispheres 98.5
Periaquaductal grey, anterior
nTPM: 99.1
1795 Male, age 51, unknown 100.2
1947 Male, age 18, unknown 99.9
2502 Female, age 75, unknown 97.2
Periaquaductal grey, dorsal
nTPM: 97.3
1840 Male, age 53, unknown 100.0
1831 Male, age 72, unknown 99.2
2850 Male, age 76, both hemispheres 95.4
2464 Female, age 72, unknown 94.4
Periaquaductal grey, lateral
nTPM: 98.9
2053 Male, age 18, unknown 100.0
2272 Male, age 74, both hemispheres 98.9
2140 Male, age 76, both hemispheres 97.9
Pretectal area
nTPM: 102.2
2007 Male, age 72, unknown 107.6
1944 Female, age 72, unknown 107.2
1816 Male, age 51, unknown 104.3
1817 Female, age 42, unknown 104.1
2667 Female, age 75, unknown 101.8
2273 Male, age 74, both hemispheres 101.5
2407 Male, age 75, both hemispheres 101.4
2825 Male, age 18, unknown 101.1
1815 Male, age 53, unknown 101.0
2224 Female, age 72, unknown 98.3
2316 Male, age 76, right hemisphere 96.2
Red nucleus
nTPM: 101.1
1821 Female, age 72, unknown 105.0
2823 Male, age 76, right hemisphere 103.6
1865 Male, age 51, unknown 101.3
2769 Male, age 72, unknown 101.2
1904 Male, age 53, unknown 101.1
2725 Female, age 75, unknown 101.0
1954 Female, age 42, unknown 100.9
2503 Female, age 72, unknown 100.6
2584 Male, age 75, left hemisphere 100.5
2227 Male, age 72, unknown 100.4
2785 Male, age 18, unknown 99.7
2588 Male, age 74, left hemisphere 98.2
Substantia nigra
nTPM: 102.1
1916 Female, age 42, unknown 107.8
1889 Female, age 72, unknown 106.3
2409 Female, age 72, unknown 104.3
1851 Male, age 51, unknown 103.9
2583 Male, age 75, right hemisphere 102.2
1941 Male, age 53, unknown 102.0
2590 Female, age 75, unknown 101.0
2665 Male, age 74, both hemispheres 99.2
2699 Male, age 18, unknown 98.3
2241 Male, age 72, unknown 96.4
Superior colliculus
nTPM: 100.2
2087 Female, age 72, unknown 104.4
2668 Female, age 75, unknown 103.4
2261 Male, age 18, unknown 101.2
1913 Female, age 42, unknown 101.1
1796 Male, age 53, unknown 100.2
1895 Male, age 76, right hemisphere 99.4
2587 Male, age 74, left hemisphere 99.2
1995 Male, age 72, unknown 98.4
2664 Male, age 75, both hemispheres 97.5
1839 Male, age 51, unknown 96.7
Ventral tegmental area
nTPM: 101.6
1915 Female, age 42, unknown 105.0
2410 Female, age 72, unknown 103.0
2223 Female, age 72, unknown 100.9
1942 Male, age 51, unknown 100.8
2218 Male, age 76, both hemispheres 100.7
2021 Male, age 53, unknown 99.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 87.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 87.3
Samples: 139

Max nTPM: 193.9
Min nTPM: 39.5
Std nTPM: 25.2
Median nTPM: 82.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 193.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 181.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 163.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 156.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 145.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 139.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 137.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 136.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 134.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 134.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 131.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 40.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 40.6
FF:10158-103A5 76 years, female 40.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 226.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 226.3
Samples: 4

Max nTPM: 278.5
Min nTPM: 188.7
Sample A Male 278.5
Sample B Male 209.0
Sample C Female 188.7
Sample D Female 229.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.8
68523348 Antisense, RP_050118_02_F01, Mouse strain C57BL/6J (56 days, male) 3.8

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