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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:305.1 nTPM
HPA:305.1 nTPM
GTEx:248.8 nTPM
FANTOM5:107.0 Scaled Tags Per Million
Pig:134.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 305.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 288.7
2565 Male, age 75, midline 310.3
2194 Female, age 79, both hemispheres 297.6
1981 Female, age 72, midline 291.6
2816 Male, age 47, midline 283.9
2048 Male, age 55, midline 260.1
Cervical spinal cord, dorsal horn
nTPM: 305.1
2296 Male, age 66, both hemispheres 350.3
2173 Female, age 72, unknown 320.1
1877 Male, age 55, unknown 303.6
2069 Male, age 47, both hemispheres 302.4
2297 Male, age 75, both hemispheres 287.5
2721 Male, age 90, both hemispheres 266.7
Cervical spinal cord, ventral horn
nTPM: 295.7
2480 Male, age 75, both hemispheres 320.0
2068 Male, age 55, unknown 302.5
2820 Female, age 79, both hemispheres 296.8
2809 Male, age 90, both hemispheres 290.0
2295 Male, age 66, both hemispheres 283.1
2098 Female, age 72, unknown 282.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 248.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 248.8
Samples: 159

Max nTPM: 425.5
Min nTPM: 136.3
Std nTPM: 55.0
Median nTPM: 238.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 425.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 404.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 398.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 389.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 385.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 362.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 360.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 349.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 346.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 339.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 338.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 331.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 329.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 328.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 326.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 325.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 319.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 319.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 318.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 311.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 310.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 310.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 305.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 304.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 303.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 302.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 302.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 302.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 300.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 300.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 299.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 299.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 299.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 298.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 297.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 297.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 291.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 286.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 284.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 284.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 284.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 281.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 278.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 276.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 275.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 274.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 273.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 273.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 273.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 271.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 271.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 269.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 268.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 260.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 259.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 258.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 258.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 255.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 253.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 253.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 253.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 253.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 251.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 249.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 249.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 248.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 247.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 247.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 246.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 246.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 246.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 244.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 243.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 243.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 240.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 240.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 239.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 239.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 239.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 238.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 238.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 238.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 238.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 238.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 237.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 237.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 237.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 236.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 236.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 235.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 235.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 233.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 232.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 232.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 231.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 231.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 229.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 228.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 226.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 226.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 224.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 224.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 224.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 224.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 223.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 222.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 221.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 220.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 219.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 219.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 218.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 217.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 216.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 216.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 214.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 214.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 214.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 212.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 210.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 210.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 209.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 209.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 208.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 208.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 208.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 206.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 206.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 206.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 203.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 201.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 199.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 198.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 198.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 195.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 193.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 193.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 191.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 190.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 190.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 187.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 187.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 186.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 184.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 182.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 182.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 179.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 178.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 176.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 176.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 176.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 172.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 166.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 166.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 162.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 160.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 159.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 150.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 148.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 136.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 107.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 107.0
FF:10181-103D1 60 years, female 117.9
FF:10159-103A6 76 years, female 96.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 134.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 134.5
Samples: 4

Max nTPM: 159.2
Min nTPM: 112.2
Sample A Female 159.2
Sample B Female 112.2
Sample C Male 135.4
Sample D Male 131.0
Ventral spinal cord
nTPM: 134.6
Samples: 4

Max nTPM: 140.1
Min nTPM: 126.8
Sample A Female 140.1
Sample B Female 135.1
Sample C Male 136.2
Sample D Male 126.8

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