BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:35.9 nTPM
HPA:35.9 nTPM
GTEx:19.7 nTPM
FANTOM5:118.2 Scaled Tags Per Million
Pig:27.7 nTPM
Mouse:13.7 nTPM
Allen mouse:0.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA020659
Glial cells Not detected
Neuronal cells Not detected


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 35.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 21.6
2846 Female, age 79, unknown 28.8
1857 Female, age 85, left hemisphere 26.3
1854 Male, age 80, left hemisphere 26.1
2289 Male, age 61, right hemisphere 22.2
2481 Female, age 94, left hemisphere 20.7
1781 Male, age 74, unknown 19.8
2290 Female, age 72, unknown 16.8
2288 Male, age 75, left hemisphere 12.0
Claustrum
nTPM: 21.6
2292 Female, age 85, both hemispheres 49.7
2198 Male, age 80, both hemispheres 25.0
2645 Female, age 72, unknown 24.9
2196 Female, age 79, unknown 24.8
2568 Male, age 61, both hemispheres 20.1
2392 Female, age 94, both hemispheres 15.6
2284 Female, age 91, both hemispheres 13.5
1956 Male, age 74, unknown 13.1
2491 Male, age 75, both hemispheres 7.6
Globus pallidus, externus
nTPM: 35.1
2395 Male, age 75, both hemispheres 42.9
2567 Female, age 72, unknown 38.5
2772 Female, age 79, unknown 33.7
1996 Male, age 80, right hemisphere 30.6
2646 Male, age 61, right hemisphere 29.9
Globus pallidus, internus
nTPM: 35.8
2037 Male, age 80, right hemisphere 49.1
2566 Female, age 72, unknown 44.7
1818 Male, age 74, unknown 39.0
2778 Female, age 91, both hemispheres 37.7
2483 Female, age 94, right hemisphere 35.2
2111 Female, age 85, right hemisphere 33.2
2287 Male, age 75, right hemisphere 11.6
Nucleus accumbens
nTPM: 18.5
2732 Male, age 80, right hemisphere 26.8
1856 Female, age 91, right hemisphere 23.0
1783 Male, age 74, unknown 21.1
1806 Female, age 85, left hemisphere 20.6
2698 Female, age 72, unknown 20.0
2391 Female, age 94, left hemisphere 16.1
2824 Male, age 61, right hemisphere 11.7
2286 Male, age 75, left hemisphere 8.8
Nucleus basalis of Meynert
nTPM: 35.9
2484 Female, age 94, left hemisphere 41.8
2569 Male, age 61, both hemispheres 39.9
2821 Male, age 75, both hemispheres 32.7
2393 Male, age 80, right hemisphere 29.4
Nucleus of the diagonal band
nTPM: 15.7
2029 Male, age 61, right hemisphere 19.0
2195 Female, age 85, both hemispheres 16.0
1979 Male, age 74, unknown 15.9
1812 Female, age 91, both hemispheres 15.5
2775 Male, age 80, right hemisphere 12.3
Olfactory tubercle
nTPM: 12.2
1846 Male, age 80, right hemisphere 18.0
2487 Female, age 94, left hemisphere 12.1
2856 Male, age 75, right hemisphere 10.1
1998 Female, age 91, both hemispheres 8.5
Putamen
nTPM: 27.6
2489 Female, age 72, unknown 40.5
2482 Female, age 94, left hemisphere 34.3
1937 Female, age 91, right hemisphere 27.4
1829 Male, age 74, unknown 25.8
2466 Female, age 79, unknown 24.2
2647 Male, age 75, left hemisphere 21.6
1838 Male, age 80, right hemisphere 19.2
Septal nuclei
nTPM: 19.7
2394 Male, age 61, left hemisphere 39.7
2199 Male, age 80, right hemisphere 32.6
2059 Female, age 85, both hemispheres 21.9
2009 Female, age 91, both hemispheres 16.8
1960 Male, age 74, unknown 12.2
2031 Female, age 72, unknown 10.7
2629 Female, age 94, right hemisphere 4.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 19.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 17.9
Samples: 246

Max nTPM: 52.2
Min nTPM: 2.1
Std nTPM: 9.4
Median nTPM: 16.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 52.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 48.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 48.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 45.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 45.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 42.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 42.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 42.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 41.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 41.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 40.2
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 13.4
Samples: 246

Max nTPM: 93.8
Min nTPM: 2.2
Std nTPM: 10.1
Median nTPM: 11.1
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 93.8
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 67.6
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 52.8
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 41.4
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 40.9
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 39.3
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 36.2
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 35.3
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 34.0
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 33.2
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 30.7
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 19.7
Samples: 205

Max nTPM: 101.1
Min nTPM: 4.4
Std nTPM: 11.9
Median nTPM: 17.0
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 101.1
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 72.0
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 56.0
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 50.2
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 47.0
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 46.1
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 45.9
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 43.9
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 42.9
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 41.7
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 40.2
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 118.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 80.0
FF:10164-103B2 76 years, female 80.0
Globus pallidus
Scaled Tags Per Million: 118.2
FF:10161-103A8 76 years, female 160.8
FF:10175-103C4 60 years, female 75.7
Nucleus accumbens
Scaled Tags Per Million: 69.9
FF:10037-101F1 23-56 years, mixed 69.9
Putamen
Scaled Tags Per Million: 60.7
FF:10176-103C5 60 years, female 60.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 27.7
Pig sample Sample description nTPM
Caudate
nTPM: 23.1
Samples: 4

Max nTPM: 24.2
Min nTPM: 20.6
Sample A Female 20.6
Sample B Female 23.8
Sample C Male 24.2
Sample D Male 23.8
Putamen
nTPM: 27.7
Samples: 4

Max nTPM: 28.4
Min nTPM: 27.2
Sample A Female 27.8
Sample B Female 27.2
Sample C Male 28.4
Sample D Male 27.4
Septum
nTPM: 24.1
Samples: 4

Max nTPM: 28.8
Min nTPM: 17.4
Sample A Female 28.8
Sample B Female 22.2
Sample C Male 27.8
Sample D Male 17.4
Ventral pallidum
nTPM: 22.3
Samples: 4

Max nTPM: 23.3
Min nTPM: 20.7
Sample A Female 23.0
Sample B Female 22.2
Sample C Male 23.3
Sample D Male 20.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 13.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 13.7
Samples: 4

Max nTPM: 14.8
Min nTPM: 13.2
Sample A Male 13.4
Sample B Male 13.4
Sample C Female 13.2
Sample D Female 14.8
Septum
nTPM: 9.1
Samples: 4

Max nTPM: 9.8
Min nTPM: 8.3
Sample A Male 8.8
Sample B Male 9.6
Sample C Female 9.8
Sample D Female 8.3
Ventral forebrain
nTPM: 11.2
Samples: 4

Max nTPM: 12.1
Min nTPM: 10.5
Sample A Male 11.4
Sample B Male 10.8
Sample C Female 12.1
Sample D Female 10.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.5
69874096 Antisense, RP_050512_02_F06, Mouse strain C57BL/6J (56 days, male) 0.5
Pallidum
Expression energy: 0.3
69874096 Antisense, RP_050512_02_F06, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.