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FXYD6
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:230.8 nTPM
HPA:230.8 nTPM
GTEx:236.7 nTPM
FANTOM5:228.5 Scaled Tags Per Million
Pig:122.4 nTPM
Mouse:156.5 nTPM
Allen mouse:11.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 230.8
Sample id Sample description nTPM
Amygdala
nTPM: 88.7
1987 Female, age 91, left hemisphere 130.6
2517 Female, age 94, left hemisphere 103.8
2514 Male, age 75, right hemisphere 80.8
2814 Male, age 76, right hemisphere 75.5
2695 Female, age 67, right hemisphere 52.7
Basal amygdala
nTPM: 112.3
2243 Female, age 91, right hemisphere 139.5
2685 Female, age 94, left hemisphere 130.5
1955 Male, age 76, both hemispheres 126.6
2110 Male, age 80, left hemisphere 103.4
2827 Female, age 67, right hemisphere 99.3
2609 Male, age 75, right hemisphere 74.2
Central amygdala
nTPM: 110.9
2239 Male, age 80, left hemisphere 128.3
2701 Female, age 91, right hemisphere 125.4
2826 Female, age 94, left hemisphere 121.4
2515 Male, age 75, right hemisphere 95.4
1905 Male, age 76, both hemispheres 83.7
Corticomedial amygdala
nTPM: 128.1
2242 Female, age 91, right hemisphere 157.6
2429 Female, age 94, left hemisphere 141.7
2829 Male, age 80, left hemisphere 135.1
2240 Male, age 76, both hemispheres 134.2
2535 Female, age 67, right hemisphere 130.3
2428 Male, age 75, right hemisphere 69.5
Lateral amygdala
nTPM: 94.1
2534 Female, age 94, left hemisphere 126.5
2255 Female, age 91, right hemisphere 101.7
2256 Male, age 80, left hemisphere 101.3
1883 Male, age 76, both hemispheres 90.8
2830 Female, age 67, right hemisphere 79.4
2516 Male, age 75, right hemisphere 64.9
Stria terminalis, bed nucleus
nTPM: 230.8
1974 Female, age 91, both hemispheres 321.8
2486 Female, age 94, both hemispheres 215.0
2201 Male, age 74, unknown 155.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 236.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 236.7
Samples: 152

Max nTPM: 496.9
Min nTPM: 31.0
Std nTPM: 86.8
Median nTPM: 225.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 496.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 474.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 470.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 440.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 413.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 413.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 401.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 398.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 385.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 375.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 372.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 368.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 361.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 346.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 342.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 342.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 340.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 337.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 335.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 333.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 332.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 330.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 327.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 326.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 326.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 325.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 322.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 321.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 321.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 319.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 312.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 310.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 310.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 309.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 300.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 296.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 296.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 293.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 288.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 285.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 284.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 281.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 277.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 277.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 275.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 275.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 273.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 273.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 272.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 270.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 269.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 261.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 259.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 257.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 255.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 253.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 252.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 250.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 250.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 250.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 250.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 249.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 249.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 249.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 249.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 248.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 246.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 245.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 237.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 236.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 234.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 234.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 231.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 230.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 227.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 226.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 223.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 222.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 220.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 219.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 217.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 217.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 216.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 216.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 214.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 212.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 212.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 211.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 210.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 210.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 207.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 206.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 206.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 203.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 203.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 202.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 202.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 201.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 200.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 199.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 198.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 197.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 196.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 196.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 194.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 194.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 190.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 187.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 185.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 184.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 183.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 182.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 182.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 182.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 181.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 179.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 178.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 177.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 175.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 172.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 172.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 163.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 163.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 155.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 154.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 152.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 151.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 149.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 148.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 148.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 148.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 147.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 144.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 144.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 144.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 141.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 139.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 134.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 125.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 121.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 116.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 114.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 111.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 106.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 105.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 105.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 104.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 86.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 73.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 65.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 46.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 31.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 228.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 228.5
FF:10151-102I7 76 years, female 228.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 122.4
Pig sample Sample description nTPM
Amygdala
nTPM: 122.4
Samples: 4

Max nTPM: 164.9
Min nTPM: 87.5
Sample A Female 164.9
Sample B Female 87.5
Sample C Male 116.1
Sample D Male 120.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 156.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 156.6
Samples: 4

Max nTPM: 170.1
Min nTPM: 131.3
Sample A Male 170.1
Sample B Male 167.9
Sample C Female 131.3
Sample D Female 156.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 11.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 11.6
69113656 Antisense, RP_050316_02_E05, Mouse strain C57BL/6J (56 days, male) 13.3
73592534 Antisense, RP_051017_01_E10, Mouse strain C57BL/6J (56 days, male) 9.9

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