BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:872.7 nTPM
HPA:872.7 nTPM
GTEx:1051.8 nTPM
FANTOM5:487.5 Scaled Tags Per Million
Mouse:2624.2 nTPM
Allen mouse:2.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 872.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 822.9
2290 Female, age 72, unknown 852.2
2481 Female, age 94, left hemisphere 846.8
2846 Female, age 79, unknown 833.7
1781 Male, age 74, unknown 830.8
1857 Female, age 85, left hemisphere 824.2
1854 Male, age 80, left hemisphere 805.4
2288 Male, age 75, left hemisphere 795.6
2289 Male, age 61, right hemisphere 794.3
Claustrum
nTPM: 799.7
2491 Male, age 75, both hemispheres 830.7
2196 Female, age 79, unknown 827.7
2292 Female, age 85, both hemispheres 820.2
2198 Male, age 80, both hemispheres 816.4
2392 Female, age 94, both hemispheres 797.3
1956 Male, age 74, unknown 787.1
2284 Female, age 91, both hemispheres 778.9
2568 Male, age 61, both hemispheres 770.1
2645 Female, age 72, unknown 769.1
Globus pallidus, externus
nTPM: 863.9
1996 Male, age 80, right hemisphere 921.9
2772 Female, age 79, unknown 881.3
2567 Female, age 72, unknown 880.9
2395 Male, age 75, both hemispheres 834.9
2646 Male, age 61, right hemisphere 800.4
Globus pallidus, internus
nTPM: 872.7
2483 Female, age 94, right hemisphere 915.6
2287 Male, age 75, right hemisphere 897.0
2566 Female, age 72, unknown 882.0
2111 Female, age 85, right hemisphere 870.5
2778 Female, age 91, both hemispheres 861.1
2037 Male, age 80, right hemisphere 856.2
1818 Male, age 74, unknown 826.5
Nucleus accumbens
nTPM: 820.8
1783 Male, age 74, unknown 840.5
1806 Female, age 85, left hemisphere 834.1
2391 Female, age 94, left hemisphere 831.8
2732 Male, age 80, right hemisphere 830.7
2698 Female, age 72, unknown 827.7
2286 Male, age 75, left hemisphere 815.3
1856 Female, age 91, right hemisphere 808.7
2824 Male, age 61, right hemisphere 777.5
Nucleus basalis of Meynert
nTPM: 820.3
2484 Female, age 94, left hemisphere 850.7
2569 Male, age 61, both hemispheres 823.2
2821 Male, age 75, both hemispheres 813.3
2393 Male, age 80, right hemisphere 794.0
Nucleus of the diagonal band
nTPM: 787.1
1979 Male, age 74, unknown 829.3
2195 Female, age 85, both hemispheres 805.6
1812 Female, age 91, both hemispheres 779.5
2775 Male, age 80, right hemisphere 774.7
2029 Male, age 61, right hemisphere 746.4
Olfactory tubercle
nTPM: 770.2
1846 Male, age 80, right hemisphere 780.0
2487 Female, age 94, left hemisphere 778.1
1998 Female, age 91, both hemispheres 764.4
2856 Male, age 75, right hemisphere 758.3
Putamen
nTPM: 804.8
2482 Female, age 94, left hemisphere 842.5
2489 Female, age 72, unknown 835.5
2466 Female, age 79, unknown 818.0
1937 Female, age 91, right hemisphere 798.5
2647 Male, age 75, left hemisphere 790.9
1838 Male, age 80, right hemisphere 778.9
1829 Male, age 74, unknown 769.4
Septal nuclei
nTPM: 800.4
2199 Male, age 80, right hemisphere 820.6
2394 Male, age 61, left hemisphere 819.8
2059 Female, age 85, both hemispheres 815.5
1960 Male, age 74, unknown 814.7
2629 Female, age 94, right hemisphere 783.9
2031 Female, age 72, unknown 776.6
2009 Female, age 91, both hemispheres 771.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 1051.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 867.0
Samples: 246

Max nTPM: 1817.9
Min nTPM: 273.0
Std nTPM: 240.7
Median nTPM: 851.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1817.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1809.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1683.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1498.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1488.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 1471.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 1402.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1379.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1320.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1310.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1299.1
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 1051.8
Samples: 246

Max nTPM: 3154.9
Min nTPM: 375.5
Std nTPM: 387.3
Median nTPM: 997.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 3154.9
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 2824.4
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 2467.7
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 2119.9
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 2077.2
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 2058.0
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 1983.7
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 1877.7
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 1864.6
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 1833.4
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 1746.1
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 975.2
Samples: 205

Max nTPM: 2199.0
Min nTPM: 372.4
Std nTPM: 283.1
Median nTPM: 939.7
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 2199.0
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 2173.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 1973.5
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 1758.3
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 1628.6
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 1612.1
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 1564.8
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 1517.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 1507.5
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 1497.8
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 1478.0
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 487.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 329.0
FF:10164-103B2 76 years, female 329.0
Globus pallidus
Scaled Tags Per Million: 487.5
FF:10175-103C4 60 years, female 639.3
FF:10161-103A8 76 years, female 335.7
Nucleus accumbens
Scaled Tags Per Million: 134.0
FF:10037-101F1 23-56 years, mixed 134.0
Putamen
Scaled Tags Per Million: 314.7
FF:10176-103C5 60 years, female 314.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 2624.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2271.2
Samples: 4

Max nTPM: 3084.9
Min nTPM: 1567.6
Sample A Male 2336.5
Sample B Male 3084.9
Sample C Female 1567.6
Sample D Female 2095.9
Septum
nTPM: 2624.2
Samples: 4

Max nTPM: 3148.0
Min nTPM: 2072.3
Sample A Male 2324.4
Sample B Male 3148.0
Sample C Female 2952.0
Sample D Female 2072.3
Ventral forebrain
nTPM: 2375.9
Samples: 4

Max nTPM: 3517.2
Min nTPM: 1664.1
Sample A Male 2363.2
Sample B Male 1959.0
Sample C Female 3517.2
Sample D Female 1664.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.3
69818344 Antisense, RP_050510_04_H07, Mouse strain C57BL/6J (56 days, male) 2.3
Pallidum
Expression energy: 2.1
69818344 Antisense, RP_050510_04_H07, Mouse strain C57BL/6J (56 days, male) 2.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.