MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:9.5 nTPM
HPA:9.5 nTPM
GTEx:11.1 nTPM
FANTOM5:35.2 Scaled Tags Per Million
Pig:36.4 nTPM
Mouse:8.1 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 9.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.8
2219 Male, age 76, both hemispheres 8.7
2411 Female, age 72, unknown 8.5
2019 Male, age 18, unknown 8.3
1827 Male, age 72, unknown 8.1
1870 Female, age 42, unknown 7.9
2666 Male, age 74, left hemisphere 7.8
2828 Female, age 72, unknown 7.8
1833 Male, age 53, unknown 7.6
1830 Male, age 51, unknown 7.1
2586 Male, age 75, left hemisphere 6.1
Dorsal raphe nucleus
nTPM: 8.0
2298 Female, age 72, unknown 9.1
2750 Male, age 76, both hemispheres 8.0
2016 Female, age 72, unknown 7.9
2047 Male, age 72, unknown 7.9
1828 Male, age 53, unknown 7.0
Inferior colliculus
nTPM: 8.1
2097 Female, age 72, unknown 8.8
1848 Female, age 42, unknown 8.1
1890 Male, age 53, unknown 8.0
2849 Male, age 72, unknown 7.4
Median raphe nucleus
nTPM: 7.3
2220 Male, age 76, midline 7.3
Pedunculopontine tegmental nucleus
nTPM: 8.2
1921 Female, age 85, both hemispheres 8.5
2338 Male, age 61, both hemispheres 8.1
2334 Male, age 80, both hemispheres 8.0
Periaquaductal grey, anterior
nTPM: 8.1
1947 Male, age 18, unknown 8.5
1795 Male, age 51, unknown 7.9
2502 Female, age 75, unknown 7.9
Periaquaductal grey, dorsal
nTPM: 7.8
1840 Male, age 53, unknown 8.1
2850 Male, age 76, both hemispheres 8.0
2464 Female, age 72, unknown 7.9
1831 Male, age 72, unknown 7.4
Periaquaductal grey, lateral
nTPM: 7.5
2272 Male, age 74, both hemispheres 7.9
2140 Male, age 76, both hemispheres 7.5
2053 Male, age 18, unknown 7.2
Pretectal area
nTPM: 8.4
1816 Male, age 51, unknown 10.3
1817 Female, age 42, unknown 9.0
1815 Male, age 53, unknown 8.6
2007 Male, age 72, unknown 8.6
1944 Female, age 72, unknown 8.4
2316 Male, age 76, right hemisphere 8.3
2667 Female, age 75, unknown 8.3
2407 Male, age 75, both hemispheres 8.2
2224 Female, age 72, unknown 7.9
2825 Male, age 18, unknown 7.6
2273 Male, age 74, both hemispheres 7.1
Red nucleus
nTPM: 7.2
1821 Female, age 72, unknown 8.4
1904 Male, age 53, unknown 7.7
2823 Male, age 76, right hemisphere 7.6
2785 Male, age 18, unknown 7.5
1954 Female, age 42, unknown 7.1
2588 Male, age 74, left hemisphere 7.1
1865 Male, age 51, unknown 7.0
2227 Male, age 72, unknown 7.0
2725 Female, age 75, unknown 7.0
2769 Male, age 72, unknown 7.0
2503 Female, age 72, unknown 6.8
2584 Male, age 75, left hemisphere 6.8
Substantia nigra
nTPM: 9.5
2241 Male, age 72, unknown 12.9
1851 Male, age 51, unknown 10.7
1916 Female, age 42, unknown 10.7
1941 Male, age 53, unknown 10.0
2409 Female, age 72, unknown 9.5
2590 Female, age 75, unknown 9.4
2699 Male, age 18, unknown 8.3
2665 Male, age 74, both hemispheres 8.2
1889 Female, age 72, unknown 8.1
2583 Male, age 75, right hemisphere 7.7
Superior colliculus
nTPM: 7.7
2261 Male, age 18, unknown 8.5
2587 Male, age 74, left hemisphere 8.5
1895 Male, age 76, right hemisphere 8.4
2668 Female, age 75, unknown 8.2
1796 Male, age 53, unknown 8.1
2087 Female, age 72, unknown 7.8
1839 Male, age 51, unknown 7.2
1913 Female, age 42, unknown 7.2
1995 Male, age 72, unknown 6.8
2664 Male, age 75, both hemispheres 6.7
Ventral tegmental area
nTPM: 8.3
2410 Female, age 72, unknown 9.6
1915 Female, age 42, unknown 9.0
2218 Male, age 76, both hemispheres 8.3
2021 Male, age 53, unknown 7.8
2223 Female, age 72, unknown 7.7
1942 Male, age 51, unknown 7.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.1
Samples: 139

Max nTPM: 31.6
Min nTPM: 2.6
Std nTPM: 4.6
Median nTPM: 10.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 31.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 27.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 26.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 21.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 20.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 20.2
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 19.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 19.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 18.7
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 18.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 18.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 35.2
FF:10158-103A5 76 years, female 35.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 36.4
Pig sample Sample description nTPM
Midbrain
nTPM: 36.4
Samples: 4

Max nTPM: 58.3
Min nTPM: 26.5
Sample A Female 58.3
Sample B Female 29.7
Sample C Male 30.9
Sample D Male 26.5
Periaqueductal gray
nTPM: 28.1
Samples: 3

Max nTPM: 28.6
Min nTPM: 27.1
Sample B Female 28.6
Sample C Male 28.5
Sample D Male 27.1
Substantia nigra
nTPM: 32.9
Samples: 4

Max nTPM: 40.7
Min nTPM: 28.7
Sample A Female 40.7
Sample B Female 30.0
Sample C Male 28.7
Sample D Male 32.3
Superior colliculi
nTPM: 33.9
Samples: 4

Max nTPM: 42.3
Min nTPM: 28.9
Sample A Female 42.3
Sample B Female 28.9
Sample C Male 34.2
Sample D Male 30.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.1
Samples: 4

Max nTPM: 9.2
Min nTPM: 7.0
Sample A Male 8.6
Sample B Male 7.0
Sample C Female 7.6
Sample D Female 9.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
69529083 Antisense, RP_050421_03_D12, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.