BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:55.1 nTPM
HPA:55.1 nTPM
GTEx:59.9 nTPM
FANTOM5:52.3 Scaled Tags Per Million
Pig:18.7 nTPM
Mouse:37.1 nTPM
Allen mouse:0.7 Expression energy

CAUDATE - Antibody stainingi
Antibody CAB010223
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 55.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 55.1
2290 Female, age 72, unknown 64.7
2846 Female, age 79, unknown 63.5
2289 Male, age 61, right hemisphere 61.4
1857 Female, age 85, left hemisphere 58.7
1781 Male, age 74, unknown 54.4
1854 Male, age 80, left hemisphere 51.7
2481 Female, age 94, left hemisphere 44.1
2288 Male, age 75, left hemisphere 42.3
Claustrum
nTPM: 43.9
2568 Male, age 61, both hemispheres 50.5
2196 Female, age 79, unknown 47.9
2198 Male, age 80, both hemispheres 45.2
2645 Female, age 72, unknown 43.7
2284 Female, age 91, both hemispheres 43.6
2491 Male, age 75, both hemispheres 43.1
2392 Female, age 94, both hemispheres 42.8
2292 Female, age 85, both hemispheres 39.2
1956 Male, age 74, unknown 39.1
Globus pallidus, externus
nTPM: 39.4
2646 Male, age 61, right hemisphere 44.9
2395 Male, age 75, both hemispheres 40.2
1996 Male, age 80, right hemisphere 38.4
2772 Female, age 79, unknown 37.4
2567 Female, age 72, unknown 36.1
Globus pallidus, internus
nTPM: 38.8
2287 Male, age 75, right hemisphere 42.7
2483 Female, age 94, right hemisphere 42.4
2778 Female, age 91, both hemispheres 41.6
2111 Female, age 85, right hemisphere 39.6
1818 Male, age 74, unknown 35.8
2037 Male, age 80, right hemisphere 35.2
2566 Female, age 72, unknown 34.3
Nucleus accumbens
nTPM: 50.3
2824 Male, age 61, right hemisphere 63.9
1783 Male, age 74, unknown 62.3
1806 Female, age 85, left hemisphere 55.9
1856 Female, age 91, right hemisphere 51.1
2698 Female, age 72, unknown 46.3
2286 Male, age 75, left hemisphere 43.2
2391 Female, age 94, left hemisphere 42.2
2732 Male, age 80, right hemisphere 37.5
Nucleus basalis of Meynert
nTPM: 47.1
2484 Female, age 94, left hemisphere 51.2
2821 Male, age 75, both hemispheres 49.2
2393 Male, age 80, right hemisphere 44.6
2569 Male, age 61, both hemispheres 43.6
Nucleus of the diagonal band
nTPM: 40.6
2029 Male, age 61, right hemisphere 44.9
2195 Female, age 85, both hemispheres 42.9
1812 Female, age 91, both hemispheres 39.6
2775 Male, age 80, right hemisphere 38.4
1979 Male, age 74, unknown 37.3
Olfactory tubercle
nTPM: 41.8
2856 Male, age 75, right hemisphere 42.9
1998 Female, age 91, both hemispheres 42.8
2487 Female, age 94, left hemisphere 41.9
1846 Male, age 80, right hemisphere 39.6
Putamen
nTPM: 53.4
2466 Female, age 79, unknown 62.3
1829 Male, age 74, unknown 54.7
2489 Female, age 72, unknown 53.2
1838 Male, age 80, right hemisphere 52.2
1937 Female, age 91, right hemisphere 52.0
2647 Male, age 75, left hemisphere 51.4
2482 Female, age 94, left hemisphere 47.9
Septal nuclei
nTPM: 38.2
2031 Female, age 72, unknown 42.0
1960 Male, age 74, unknown 41.8
2629 Female, age 94, right hemisphere 38.5
2059 Female, age 85, both hemispheres 38.1
2009 Female, age 91, both hemispheres 36.3
2394 Male, age 61, left hemisphere 36.1
2199 Male, age 80, right hemisphere 34.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 59.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 59.9
Samples: 246

Max nTPM: 135.7
Min nTPM: 19.6
Std nTPM: 20.4
Median nTPM: 59.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 135.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 130.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 122.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 112.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 105.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 98.4
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 98.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 95.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 94.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 94.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 94.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 55.7
Samples: 246

Max nTPM: 102.1
Min nTPM: 12.6
Std nTPM: 19.0
Median nTPM: 55.0
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 102.1
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 101.4
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 100.4
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 100.1
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 95.8
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 94.8
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 93.7
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 90.7
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 90.1
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 88.8
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 88.0
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Brain - Putamen (basal ganglia)
Average nTPM: 55.3
Samples: 205

Max nTPM: 108.2
Min nTPM: 22.5
Std nTPM: 17.2
Median nTPM: 55.0
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 108.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 103.0
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 96.5
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 95.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 94.8
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 93.0
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 90.4
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 87.2
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 83.6
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 81.7
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 81.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 42.3
FF:10164-103B2 76 years, female 42.3
Globus pallidus
Scaled Tags Per Million: 38.4
FF:10161-103A8 76 years, female 43.7
FF:10175-103C4 60 years, female 33.1
Nucleus accumbens
Scaled Tags Per Million: 42.8
FF:10037-101F1 23-56 years, mixed 42.8
Putamen
Scaled Tags Per Million: 52.3
FF:10176-103C5 60 years, female 52.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 18.7
Pig sample Sample description nTPM
Caudate
nTPM: 18.7
Samples: 4

Max nTPM: 20.3
Min nTPM: 15.4
Sample A Female 15.4
Sample B Female 20.3
Sample C Male 18.9
Sample D Male 20.2
Putamen
nTPM: 15.0
Samples: 4

Max nTPM: 19.9
Min nTPM: 8.0
Sample A Female 8.0
Sample B Female 15.6
Sample C Male 16.3
Sample D Male 19.9
Septum
nTPM: 10.9
Samples: 4

Max nTPM: 15.0
Min nTPM: 5.7
Sample A Female 15.0
Sample B Female 13.0
Sample C Male 9.7
Sample D Male 5.7
Ventral pallidum
nTPM: 13.4
Samples: 4

Max nTPM: 17.3
Min nTPM: 9.0
Sample A Female 17.3
Sample B Female 12.4
Sample C Male 9.0
Sample D Male 14.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 37.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 37.2
Samples: 4

Max nTPM: 42.1
Min nTPM: 32.8
Sample A Male 37.8
Sample B Male 42.1
Sample C Female 32.8
Sample D Female 35.9
Septum
nTPM: 27.5
Samples: 4

Max nTPM: 31.0
Min nTPM: 25.3
Sample A Male 31.0
Sample B Male 26.6
Sample C Female 25.3
Sample D Female 27.0
Ventral forebrain
nTPM: 30.3
Samples: 4

Max nTPM: 32.4
Min nTPM: 26.8
Sample A Male 26.8
Sample B Male 32.4
Sample C Female 32.0
Sample D Female 30.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.7
76 Antisense, RP_Baylor_103319, Mouse strain C57BL/6J (56 days, male) 0.7
75 Antisense, RP_Baylor_103319, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 0.7
75 Antisense, RP_Baylor_103319, Mouse strain C57BL/6J (56 days, male) 0.7
76 Antisense, RP_Baylor_103319, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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