MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:44.1 nTPM
HPA:44.1 nTPM
GTEx:46.1 nTPM
FANTOM5:177.7 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 44.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.3
1833 Male, age 53, unknown 42.4
1870 Female, age 42, unknown 41.8
1830 Male, age 51, unknown 41.4
1827 Male, age 72, unknown 40.5
2411 Female, age 72, unknown 40.4
2019 Male, age 18, unknown 40.2
2666 Male, age 74, left hemisphere 40.2
2586 Male, age 75, left hemisphere 39.4
2828 Female, age 72, unknown 38.5
2219 Male, age 76, both hemispheres 38.2
Dorsal raphe nucleus
nTPM: 38.3
2750 Male, age 76, both hemispheres 42.8
2016 Female, age 72, unknown 40.9
1828 Male, age 53, unknown 36.8
2047 Male, age 72, unknown 36.3
2298 Female, age 72, unknown 34.8
Inferior colliculus
nTPM: 40.9
1848 Female, age 42, unknown 41.9
2097 Female, age 72, unknown 41.0
1890 Male, age 53, unknown 40.8
2849 Male, age 72, unknown 40.1
Median raphe nucleus
nTPM: 35.9
2220 Male, age 76, midline 35.9
Pedunculopontine tegmental nucleus
nTPM: 39.0
1921 Female, age 85, both hemispheres 40.8
2334 Male, age 80, both hemispheres 40.6
2338 Male, age 61, both hemispheres 35.6
Periaquaductal grey, anterior
nTPM: 39.2
2502 Female, age 75, unknown 42.0
1947 Male, age 18, unknown 41.0
1795 Male, age 51, unknown 34.7
Periaquaductal grey, dorsal
nTPM: 40.4
2464 Female, age 72, unknown 42.8
1840 Male, age 53, unknown 40.8
1831 Male, age 72, unknown 39.4
2850 Male, age 76, both hemispheres 38.5
Periaquaductal grey, lateral
nTPM: 37.4
2140 Male, age 76, both hemispheres 38.3
2053 Male, age 18, unknown 38.2
2272 Male, age 74, both hemispheres 35.7
Pretectal area
nTPM: 41.1
2007 Male, age 72, unknown 44.6
1815 Male, age 53, unknown 44.4
1944 Female, age 72, unknown 43.7
2316 Male, age 76, right hemisphere 43.7
1817 Female, age 42, unknown 42.9
1816 Male, age 51, unknown 41.7
2825 Male, age 18, unknown 40.4
2667 Female, age 75, unknown 38.7
2224 Female, age 72, unknown 38.3
2273 Male, age 74, both hemispheres 37.1
2407 Male, age 75, both hemispheres 36.9
Red nucleus
nTPM: 44.1
2823 Male, age 76, right hemisphere 50.6
2503 Female, age 72, unknown 49.6
1904 Male, age 53, unknown 48.4
1865 Male, age 51, unknown 46.2
1821 Female, age 72, unknown 45.1
1954 Female, age 42, unknown 45.1
2588 Male, age 74, left hemisphere 42.9
2769 Male, age 72, unknown 41.8
2785 Male, age 18, unknown 41.2
2227 Male, age 72, unknown 41.1
2725 Female, age 75, unknown 39.6
2584 Male, age 75, left hemisphere 37.7
Substantia nigra
nTPM: 40.1
2583 Male, age 75, right hemisphere 42.4
2241 Male, age 72, unknown 42.3
1889 Female, age 72, unknown 41.9
2699 Male, age 18, unknown 41.2
2409 Female, age 72, unknown 41.1
2590 Female, age 75, unknown 40.2
1851 Male, age 51, unknown 39.4
2665 Male, age 74, both hemispheres 38.9
1941 Male, age 53, unknown 36.9
1916 Female, age 42, unknown 36.5
Superior colliculus
nTPM: 41.8
1895 Male, age 76, right hemisphere 46.1
2668 Female, age 75, unknown 44.9
1995 Male, age 72, unknown 44.3
1913 Female, age 42, unknown 44.2
2087 Female, age 72, unknown 41.9
1839 Male, age 51, unknown 41.3
2261 Male, age 18, unknown 40.2
1796 Male, age 53, unknown 38.3
2587 Male, age 74, left hemisphere 38.2
2664 Male, age 75, both hemispheres 38.2
Ventral tegmental area
nTPM: 37.7
1942 Male, age 51, unknown 39.6
2410 Female, age 72, unknown 38.8
2223 Female, age 72, unknown 37.9
2021 Male, age 53, unknown 36.8
1915 Female, age 42, unknown 36.4
2218 Male, age 76, both hemispheres 36.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.1
Samples: 139

Max nTPM: 94.7
Min nTPM: 25.9
Std nTPM: 13.7
Median nTPM: 43.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 94.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 85.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 84.5
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 82.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 80.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 78.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 72.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 72.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 70.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 70.2
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 68.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 177.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 177.7
FF:10158-103A5 76 years, female 177.7

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The Human Protein Atlas

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