BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:48.0 nTPM
HPA:48.0 nTPM
GTEx:48.2 nTPM
FANTOM5:176.8 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA016745
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 48.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 41.9
2288 Male, age 75, left hemisphere 46.8
2481 Female, age 94, left hemisphere 44.3
2846 Female, age 79, unknown 43.3
1857 Female, age 85, left hemisphere 41.8
1781 Male, age 74, unknown 40.5
2290 Female, age 72, unknown 40.2
1854 Male, age 80, left hemisphere 39.8
2289 Male, age 61, right hemisphere 38.6
Claustrum
nTPM: 41.3
2292 Female, age 85, both hemispheres 45.8
2392 Female, age 94, both hemispheres 44.6
1956 Male, age 74, unknown 43.7
2491 Male, age 75, both hemispheres 42.6
2198 Male, age 80, both hemispheres 40.9
2568 Male, age 61, both hemispheres 40.4
2284 Female, age 91, both hemispheres 39.3
2196 Female, age 79, unknown 39.0
2645 Female, age 72, unknown 35.3
Globus pallidus, externus
nTPM: 46.7
2567 Female, age 72, unknown 51.6
1996 Male, age 80, right hemisphere 48.3
2395 Male, age 75, both hemispheres 45.2
2646 Male, age 61, right hemisphere 45.1
2772 Female, age 79, unknown 43.2
Globus pallidus, internus
nTPM: 48.0
2287 Male, age 75, right hemisphere 55.7
2111 Female, age 85, right hemisphere 51.9
2778 Female, age 91, both hemispheres 48.4
2483 Female, age 94, right hemisphere 45.6
2037 Male, age 80, right hemisphere 45.4
1818 Male, age 74, unknown 44.8
2566 Female, age 72, unknown 44.1
Nucleus accumbens
nTPM: 41.9
2391 Female, age 94, left hemisphere 46.1
2286 Male, age 75, left hemisphere 43.8
2824 Male, age 61, right hemisphere 43.7
2698 Female, age 72, unknown 43.0
1806 Female, age 85, left hemisphere 42.8
2732 Male, age 80, right hemisphere 39.6
1783 Male, age 74, unknown 38.6
1856 Female, age 91, right hemisphere 37.8
Nucleus basalis of Meynert
nTPM: 40.7
2569 Male, age 61, both hemispheres 42.6
2484 Female, age 94, left hemisphere 40.5
2393 Male, age 80, right hemisphere 40.3
2821 Male, age 75, both hemispheres 39.4
Nucleus of the diagonal band
nTPM: 37.1
2029 Male, age 61, right hemisphere 39.7
1812 Female, age 91, both hemispheres 37.6
2195 Female, age 85, both hemispheres 36.4
2775 Male, age 80, right hemisphere 36.1
1979 Male, age 74, unknown 35.6
Olfactory tubercle
nTPM: 38.6
1846 Male, age 80, right hemisphere 39.7
2487 Female, age 94, left hemisphere 39.3
2856 Male, age 75, right hemisphere 39.3
1998 Female, age 91, both hemispheres 35.9
Putamen
nTPM: 40.5
1829 Male, age 74, unknown 42.9
2647 Male, age 75, left hemisphere 41.7
1937 Female, age 91, right hemisphere 41.3
2482 Female, age 94, left hemisphere 40.9
2466 Female, age 79, unknown 40.2
1838 Male, age 80, right hemisphere 38.6
2489 Female, age 72, unknown 38.1
Septal nuclei
nTPM: 36.4
2394 Male, age 61, left hemisphere 40.7
2199 Male, age 80, right hemisphere 38.7
2031 Female, age 72, unknown 37.4
2629 Female, age 94, right hemisphere 37.2
2009 Female, age 91, both hemispheres 34.0
2059 Female, age 85, both hemispheres 33.6
1960 Male, age 74, unknown 33.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 48.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 43.9
Samples: 246

Max nTPM: 86.0
Min nTPM: 25.5
Std nTPM: 9.4
Median nTPM: 43.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 86.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 76.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 74.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 72.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 71.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 67.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 64.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 63.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 63.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 62.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 60.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 41.3
Samples: 246

Max nTPM: 116.1
Min nTPM: 18.4
Std nTPM: 10.0
Median nTPM: 39.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 116.1
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 83.8
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 82.5
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 68.4
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 67.4
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 63.0
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 62.1
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 59.9
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 59.8
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 58.8
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 56.9
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Brain - Putamen (basal ganglia)
Average nTPM: 48.2
Samples: 205

Max nTPM: 87.8
Min nTPM: 24.0
Std nTPM: 10.2
Median nTPM: 47.7
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 87.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 81.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 74.1
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 73.4
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 72.5
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 70.0
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 69.2
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 69.0
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 68.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 67.7
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 67.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 176.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 119.2
FF:10164-103B2 76 years, female 119.2
Globus pallidus
Scaled Tags Per Million: 176.8
FF:10161-103A8 76 years, female 183.2
FF:10175-103C4 60 years, female 170.5
Nucleus accumbens
Scaled Tags Per Million: 114.5
FF:10037-101F1 23-56 years, mixed 114.5
Putamen
Scaled Tags Per Million: 140.7
FF:10176-103C5 60 years, female 140.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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