MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:88.4 nTPM
HPA:88.4 nTPM
GTEx:109.3 nTPM
FANTOM5:181.2 Scaled Tags Per Million
Pig:69.0 nTPM
Mouse:187.2 nTPM
Allen mouse:2.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 88.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 81.7
2411 Female, age 72, unknown 88.8
1827 Male, age 72, unknown 88.5
2019 Male, age 18, unknown 85.3
1870 Female, age 42, unknown 84.0
1833 Male, age 53, unknown 81.9
2828 Female, age 72, unknown 80.0
2666 Male, age 74, left hemisphere 79.0
1830 Male, age 51, unknown 78.8
2586 Male, age 75, left hemisphere 75.8
2219 Male, age 76, both hemispheres 75.2
Dorsal raphe nucleus
nTPM: 85.6
2298 Female, age 72, unknown 90.0
2047 Male, age 72, unknown 87.9
1828 Male, age 53, unknown 84.9
2750 Male, age 76, both hemispheres 83.9
2016 Female, age 72, unknown 81.3
Inferior colliculus
nTPM: 82.2
2097 Female, age 72, unknown 88.1
1890 Male, age 53, unknown 82.3
1848 Female, age 42, unknown 81.7
2849 Male, age 72, unknown 76.8
Median raphe nucleus
nTPM: 87.1
2220 Male, age 76, midline 87.1
Pedunculopontine tegmental nucleus
nTPM: 84.0
2334 Male, age 80, both hemispheres 85.9
1921 Female, age 85, both hemispheres 84.5
2338 Male, age 61, both hemispheres 81.7
Periaquaductal grey, anterior
nTPM: 82.7
1947 Male, age 18, unknown 88.0
1795 Male, age 51, unknown 82.7
2502 Female, age 75, unknown 77.4
Periaquaductal grey, dorsal
nTPM: 83.8
2850 Male, age 76, both hemispheres 85.5
1831 Male, age 72, unknown 84.5
1840 Male, age 53, unknown 83.5
2464 Female, age 72, unknown 81.6
Periaquaductal grey, lateral
nTPM: 82.1
2272 Male, age 74, both hemispheres 83.9
2140 Male, age 76, both hemispheres 81.6
2053 Male, age 18, unknown 81.0
Pretectal area
nTPM: 87.7
1944 Female, age 72, unknown 95.6
1816 Male, age 51, unknown 95.0
2007 Male, age 72, unknown 93.1
1817 Female, age 42, unknown 92.3
1815 Male, age 53, unknown 90.6
2667 Female, age 75, unknown 86.8
2273 Male, age 74, both hemispheres 86.4
2224 Female, age 72, unknown 84.6
2316 Male, age 76, right hemisphere 80.4
2825 Male, age 18, unknown 80.3
2407 Male, age 75, both hemispheres 79.0
Red nucleus
nTPM: 80.7
1821 Female, age 72, unknown 88.5
2725 Female, age 75, unknown 87.5
1954 Female, age 42, unknown 83.7
2785 Male, age 18, unknown 81.5
2823 Male, age 76, right hemisphere 81.1
1904 Male, age 53, unknown 80.0
1865 Male, age 51, unknown 79.3
2584 Male, age 75, left hemisphere 78.9
2503 Female, age 72, unknown 78.1
2227 Male, age 72, unknown 77.5
2769 Male, age 72, unknown 76.9
2588 Male, age 74, left hemisphere 75.6
Substantia nigra
nTPM: 88.4
1916 Female, age 42, unknown 95.4
1889 Female, age 72, unknown 93.4
2409 Female, age 72, unknown 91.9
1851 Male, age 51, unknown 89.9
1941 Male, age 53, unknown 88.7
2241 Male, age 72, unknown 88.5
2583 Male, age 75, right hemisphere 84.7
2590 Female, age 75, unknown 84.7
2665 Male, age 74, both hemispheres 84.4
2699 Male, age 18, unknown 82.8
Superior colliculus
nTPM: 82.3
2087 Female, age 72, unknown 87.3
2261 Male, age 18, unknown 85.1
2587 Male, age 74, left hemisphere 84.4
2668 Female, age 75, unknown 84.4
1796 Male, age 53, unknown 82.6
1895 Male, age 76, right hemisphere 82.0
1995 Male, age 72, unknown 80.8
1913 Female, age 42, unknown 80.6
1839 Male, age 51, unknown 79.9
2664 Male, age 75, both hemispheres 75.6
Ventral tegmental area
nTPM: 85.3
2410 Female, age 72, unknown 93.9
1915 Female, age 42, unknown 88.1
2218 Male, age 76, both hemispheres 85.5
1942 Male, age 51, unknown 83.4
2021 Male, age 53, unknown 81.7
2223 Female, age 72, unknown 79.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 109.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 109.3
Samples: 139

Max nTPM: 181.1
Min nTPM: 70.0
Std nTPM: 21.3
Median nTPM: 106.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 181.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 171.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 171.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 161.4
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 157.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 156.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 155.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 150.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 148.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 147.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 146.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 181.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 181.2
FF:10158-103A5 76 years, female 181.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 69.0
Pig sample Sample description nTPM
Midbrain
nTPM: 68.7
Samples: 4

Max nTPM: 81.0
Min nTPM: 60.0
Sample A Female 66.2
Sample B Female 60.0
Sample C Male 81.0
Sample D Male 67.6
Periaqueductal gray
nTPM: 52.4
Samples: 3

Max nTPM: 58.5
Min nTPM: 46.7
Sample B Female 51.9
Sample C Male 58.5
Sample D Male 46.7
Substantia nigra
nTPM: 61.4
Samples: 4

Max nTPM: 78.7
Min nTPM: 44.3
Sample A Female 78.7
Sample B Female 56.2
Sample C Male 66.3
Sample D Male 44.3
Superior colliculi
nTPM: 69.0
Samples: 4

Max nTPM: 77.9
Min nTPM: 57.1
Sample A Female 77.9
Sample B Female 57.1
Sample C Male 77.6
Sample D Male 63.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 187.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 187.2
Samples: 4

Max nTPM: 191.8
Min nTPM: 182.5
Sample A Male 182.5
Sample B Male 191.8
Sample C Female 189.3
Sample D Female 185.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.6
68191486 Antisense, RP_041129_01_C07, Mouse strain C57BL/6J (56 days, male) 4.3
878 Antisense, RP_Baylor_102991, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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