BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:41.4 nTPM
HPA:41.4 nTPM
GTEx:30.3 nTPM
FANTOM5:27.5 Scaled Tags Per Million
Pig:7.6 nTPM
Mouse:36.3 nTPM
Allen mouse:1.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA013582Antibody HPA014133
Glial cells Not detectedMedium
Neuronal cells HighMedium





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 41.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 38.5
2481 Female, age 94, left hemisphere 39.4
2289 Male, age 61, right hemisphere 38.8
2846 Female, age 79, unknown 38.7
1854 Male, age 80, left hemisphere 38.6
1857 Female, age 85, left hemisphere 38.6
1781 Male, age 74, unknown 38.2
2290 Female, age 72, unknown 38.1
2288 Male, age 75, left hemisphere 37.8
Claustrum
nTPM: 37.7
2198 Male, age 80, both hemispheres 38.7
2645 Female, age 72, unknown 38.5
2491 Male, age 75, both hemispheres 38.3
1956 Male, age 74, unknown 38.0
2292 Female, age 85, both hemispheres 38.0
2284 Female, age 91, both hemispheres 37.7
2568 Male, age 61, both hemispheres 37.6
2196 Female, age 79, unknown 36.4
2392 Female, age 94, both hemispheres 36.4
Globus pallidus, externus
nTPM: 41.4
1996 Male, age 80, right hemisphere 42.5
2395 Male, age 75, both hemispheres 42.0
2772 Female, age 79, unknown 41.8
2646 Male, age 61, right hemisphere 41.0
2567 Female, age 72, unknown 39.5
Globus pallidus, internus
nTPM: 40.9
2287 Male, age 75, right hemisphere 42.2
2111 Female, age 85, right hemisphere 41.4
2037 Male, age 80, right hemisphere 41.3
2778 Female, age 91, both hemispheres 40.8
2483 Female, age 94, right hemisphere 40.7
1818 Male, age 74, unknown 40.5
2566 Female, age 72, unknown 39.5
Nucleus accumbens
nTPM: 38.5
1806 Female, age 85, left hemisphere 39.9
2286 Male, age 75, left hemisphere 39.9
2824 Male, age 61, right hemisphere 38.5
2732 Male, age 80, right hemisphere 38.3
1783 Male, age 74, unknown 38.1
1856 Female, age 91, right hemisphere 37.9
2391 Female, age 94, left hemisphere 37.8
2698 Female, age 72, unknown 37.7
Nucleus basalis of Meynert
nTPM: 38.8
2569 Male, age 61, both hemispheres 40.9
2821 Male, age 75, both hemispheres 38.3
2484 Female, age 94, left hemisphere 38.2
2393 Male, age 80, right hemisphere 37.8
Nucleus of the diagonal band
nTPM: 39.1
2029 Male, age 61, right hemisphere 39.5
1812 Female, age 91, both hemispheres 39.3
2775 Male, age 80, right hemisphere 39.1
1979 Male, age 74, unknown 39.0
2195 Female, age 85, both hemispheres 38.5
Olfactory tubercle
nTPM: 38.1
1846 Male, age 80, right hemisphere 39.1
2487 Female, age 94, left hemisphere 38.8
1998 Female, age 91, both hemispheres 37.7
2856 Male, age 75, right hemisphere 37.1
Putamen
nTPM: 38.1
2482 Female, age 94, left hemisphere 39.0
2466 Female, age 79, unknown 38.8
2647 Male, age 75, left hemisphere 38.5
2489 Female, age 72, unknown 38.0
1937 Female, age 91, right hemisphere 37.6
1838 Male, age 80, right hemisphere 37.5
1829 Male, age 74, unknown 36.9
Septal nuclei
nTPM: 39.1
1960 Male, age 74, unknown 40.6
2394 Male, age 61, left hemisphere 40.6
2059 Female, age 85, both hemispheres 39.4
2031 Female, age 72, unknown 39.3
2199 Male, age 80, right hemisphere 38.5
2629 Female, age 94, right hemisphere 38.2
2009 Female, age 91, both hemispheres 37.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 30.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 27.5
Samples: 246

Max nTPM: 59.7
Min nTPM: 15.1
Std nTPM: 5.8
Median nTPM: 26.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 59.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 53.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 44.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 41.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 40.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 40.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 40.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 40.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 39.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 39.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 38.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 27.5
Samples: 246

Max nTPM: 51.6
Min nTPM: 14.0
Std nTPM: 6.7
Median nTPM: 25.8
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 51.6
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 51.6
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 48.7
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 46.9
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 45.9
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 45.2
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 44.6
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 44.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 43.9
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 42.4
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 41.5
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Brain - Putamen (basal ganglia)
Average nTPM: 30.3
Samples: 205

Max nTPM: 52.0
Min nTPM: 10.4
Std nTPM: 6.3
Median nTPM: 29.6
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 52.0
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 49.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 46.0
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 45.6
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 44.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 42.6
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 42.0
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 41.9
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 41.9
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 41.7
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 41.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 22.7
FF:10164-103B2 76 years, female 22.7
Globus pallidus
Scaled Tags Per Million: 23.5
FF:10161-103A8 76 years, female 24.2
FF:10175-103C4 60 years, female 22.8
Nucleus accumbens
Scaled Tags Per Million: 27.5
FF:10037-101F1 23-56 years, mixed 27.5
Putamen
Scaled Tags Per Million: 23.8
FF:10176-103C5 60 years, female 23.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 7.6
Pig sample Sample description nTPM
Caudate
nTPM: 7.2
Samples: 4

Max nTPM: 8.5
Min nTPM: 5.7
Sample A Female 5.7
Sample B Female 7.7
Sample C Male 8.5
Sample D Male 6.7
Putamen
nTPM: 7.2
Samples: 4

Max nTPM: 8.1
Min nTPM: 6.5
Sample A Female 6.5
Sample B Female 6.6
Sample C Male 8.1
Sample D Male 7.6
Septum
nTPM: 7.6
Samples: 4

Max nTPM: 9.6
Min nTPM: 6.3
Sample A Female 6.3
Sample B Female 7.4
Sample C Male 9.6
Sample D Male 7.2
Ventral pallidum
nTPM: 7.3
Samples: 4

Max nTPM: 9.6
Min nTPM: 5.6
Sample A Female 5.6
Sample B Female 7.6
Sample C Male 9.6
Sample D Male 6.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 36.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 34.2
Samples: 4

Max nTPM: 36.9
Min nTPM: 31.0
Sample A Male 33.2
Sample B Male 31.0
Sample C Female 35.6
Sample D Female 36.9
Septum
nTPM: 30.4
Samples: 4

Max nTPM: 31.9
Min nTPM: 28.6
Sample A Male 31.9
Sample B Male 28.6
Sample C Female 29.8
Sample D Female 31.1
Ventral forebrain
nTPM: 36.3
Samples: 4

Max nTPM: 39.5
Min nTPM: 33.7
Sample A Male 37.5
Sample B Male 34.5
Sample C Female 33.7
Sample D Female 39.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.8
73584783 Antisense, RP_051206_01_B07, Mouse strain C57BL/6J (56 days, male) 1.8
Pallidum
Expression energy: 1.3
73584783 Antisense, RP_051206_01_B07, Mouse strain C57BL/6J (56 days, male) 1.3

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