BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:6.7 nTPM
HPA:6.7 nTPM
GTEx:20.8 nTPM
FANTOM5:64.7 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA061357
Glial cells Not detected
Neuronal cells Not detected


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 6.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.8
2846 Female, age 79, unknown 7.5
1857 Female, age 85, left hemisphere 5.9
2290 Female, age 72, unknown 5.0
1854 Male, age 80, left hemisphere 4.4
1781 Male, age 74, unknown 4.1
2289 Male, age 61, right hemisphere 2.0
2288 Male, age 75, left hemisphere 1.3
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 1.7
2568 Male, age 61, both hemispheres 4.0
2196 Female, age 79, unknown 3.3
2645 Female, age 72, unknown 2.5
1956 Male, age 74, unknown 1.8
2198 Male, age 80, both hemispheres 1.5
2491 Male, age 75, both hemispheres 1.1
2292 Female, age 85, both hemispheres 0.8
2284 Female, age 91, both hemispheres 0.6
2392 Female, age 94, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.0
2646 Male, age 61, right hemisphere 0.1
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 4.3
1856 Female, age 91, right hemisphere 8.9
1783 Male, age 74, unknown 7.3
2824 Male, age 61, right hemisphere 7.0
2698 Female, age 72, unknown 5.1
1806 Female, age 85, left hemisphere 4.2
2286 Male, age 75, left hemisphere 1.8
2391 Female, age 94, left hemisphere 0.0
2732 Male, age 80, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 2.5
2484 Female, age 94, left hemisphere 4.2
2821 Male, age 75, both hemispheres 3.6
2393 Male, age 80, right hemisphere 2.3
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 6.7
2195 Female, age 85, both hemispheres 9.3
2029 Male, age 61, right hemisphere 7.5
2775 Male, age 80, right hemisphere 7.5
1812 Female, age 91, both hemispheres 6.7
1979 Male, age 74, unknown 2.5
Olfactory tubercle
nTPM: 6.4
1846 Male, age 80, right hemisphere 8.7
2487 Female, age 94, left hemisphere 7.3
1998 Female, age 91, both hemispheres 4.9
2856 Male, age 75, right hemisphere 4.7
Putamen
nTPM: 4.3
1838 Male, age 80, right hemisphere 9.1
1937 Female, age 91, right hemisphere 4.6
2489 Female, age 72, unknown 4.3
2466 Female, age 79, unknown 4.1
2647 Male, age 75, left hemisphere 3.5
1829 Male, age 74, unknown 3.0
2482 Female, age 94, left hemisphere 1.5
Septal nuclei
nTPM: 5.0
1960 Male, age 74, unknown 11.2
2629 Female, age 94, right hemisphere 7.4
2031 Female, age 72, unknown 7.0
2009 Female, age 91, both hemispheres 4.8
2059 Female, age 85, both hemispheres 4.8
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 20.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 16.1
Samples: 246

Max nTPM: 35.1
Min nTPM: 2.2
Std nTPM: 7.4
Median nTPM: 15.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 35.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 34.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 32.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 31.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 30.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 30.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 30.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 30.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 29.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 29.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 29.4
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 20.8
Samples: 246

Max nTPM: 41.9
Min nTPM: 3.4
Std nTPM: 8.8
Median nTPM: 21.6
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 41.9
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 39.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 39.0
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 38.8
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 36.9
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 36.7
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 36.6
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 35.9
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 35.4
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 34.1
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 34.0
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 15.8
Samples: 205

Max nTPM: 34.4
Min nTPM: 1.0
Std nTPM: 7.5
Median nTPM: 15.0
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 34.4
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 34.1
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 32.4
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 32.4
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 32.3
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 29.4
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 29.3
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 29.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 29.1
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 28.3
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 28.2
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 64.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 63.5
FF:10164-103B2 76 years, female 63.5
Globus pallidus
Scaled Tags Per Million: 49.7
FF:10175-103C4 60 years, female 56.0
FF:10161-103A8 76 years, female 43.5
Nucleus accumbens
Scaled Tags Per Million: 64.7
FF:10037-101F1 23-56 years, mixed 64.7
Putamen
Scaled Tags Per Million: 55.2
FF:10176-103C5 60 years, female 55.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.