BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:61.1 nTPM
HPA:61.1 nTPM
GTEx:68.5 nTPM
FANTOM5:68.5 Scaled Tags Per Million
Pig:38.7 nTPM
Mouse:50.7 nTPM
Allen mouse:0.3 Expression energy

CAUDATE - Antibody stainingi
Antibody CAB004312
Glial cells Low


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 61.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 56.3
2481 Female, age 94, left hemisphere 58.6
2288 Male, age 75, left hemisphere 58.4
1781 Male, age 74, unknown 57.6
1857 Female, age 85, left hemisphere 56.7
2290 Female, age 72, unknown 56.2
1854 Male, age 80, left hemisphere 55.7
2846 Female, age 79, unknown 55.2
2289 Male, age 61, right hemisphere 52.5
Claustrum
nTPM: 56.6
2392 Female, age 94, both hemispheres 60.5
2491 Male, age 75, both hemispheres 60.4
2198 Male, age 80, both hemispheres 58.2
2284 Female, age 91, both hemispheres 57.8
1956 Male, age 74, unknown 57.4
2196 Female, age 79, unknown 54.4
2568 Male, age 61, both hemispheres 54.4
2292 Female, age 85, both hemispheres 54.2
2645 Female, age 72, unknown 52.2
Globus pallidus, externus
nTPM: 54.2
2772 Female, age 79, unknown 58.2
2395 Male, age 75, both hemispheres 57.7
1996 Male, age 80, right hemisphere 56.3
2646 Male, age 61, right hemisphere 52.7
2567 Female, age 72, unknown 46.1
Globus pallidus, internus
nTPM: 56.1
2287 Male, age 75, right hemisphere 64.7
2483 Female, age 94, right hemisphere 64.0
2778 Female, age 91, both hemispheres 55.8
1818 Male, age 74, unknown 54.7
2037 Male, age 80, right hemisphere 54.7
2111 Female, age 85, right hemisphere 51.6
2566 Female, age 72, unknown 47.2
Nucleus accumbens
nTPM: 59.0
2286 Male, age 75, left hemisphere 63.6
1856 Female, age 91, right hemisphere 63.2
2824 Male, age 61, right hemisphere 62.0
1783 Male, age 74, unknown 59.2
1806 Female, age 85, left hemisphere 58.5
2391 Female, age 94, left hemisphere 58.0
2698 Female, age 72, unknown 54.0
2732 Male, age 80, right hemisphere 53.7
Nucleus basalis of Meynert
nTPM: 52.9
2821 Male, age 75, both hemispheres 54.2
2484 Female, age 94, left hemisphere 53.3
2393 Male, age 80, right hemisphere 52.2
2569 Male, age 61, both hemispheres 52.1
Nucleus of the diagonal band
nTPM: 61.1
1812 Female, age 91, both hemispheres 64.5
2195 Female, age 85, both hemispheres 63.8
2775 Male, age 80, right hemisphere 63.8
2029 Male, age 61, right hemisphere 59.3
1979 Male, age 74, unknown 54.2
Olfactory tubercle
nTPM: 60.5
1998 Female, age 91, both hemispheres 63.1
2487 Female, age 94, left hemisphere 62.4
1846 Male, age 80, right hemisphere 59.6
2856 Male, age 75, right hemisphere 56.9
Putamen
nTPM: 53.5
1937 Female, age 91, right hemisphere 58.6
2466 Female, age 79, unknown 57.3
1838 Male, age 80, right hemisphere 56.9
2482 Female, age 94, left hemisphere 55.4
1829 Male, age 74, unknown 52.1
2647 Male, age 75, left hemisphere 47.7
2489 Female, age 72, unknown 46.8
Septal nuclei
nTPM: 58.4
2031 Female, age 72, unknown 66.3
1960 Male, age 74, unknown 65.7
2009 Female, age 91, both hemispheres 60.6
2059 Female, age 85, both hemispheres 58.5
2629 Female, age 94, right hemisphere 54.8
2199 Male, age 80, right hemisphere 51.6
2394 Male, age 61, left hemisphere 51.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 68.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 61.2
Samples: 246

Max nTPM: 88.0
Min nTPM: 42.0
Std nTPM: 8.2
Median nTPM: 60.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 88.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 87.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 87.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 85.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 83.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 82.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 82.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 81.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 81.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 80.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 79.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 68.5
Samples: 246

Max nTPM: 110.2
Min nTPM: 38.1
Std nTPM: 10.0
Median nTPM: 68.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 110.2
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 107.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 101.3
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 92.2
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 92.1
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 89.8
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 88.6
GTEX-1GZ4I-0011-R6b-SM-9WG77 50-59 years, male 87.7
GTEX-1EX96-0011-R6a-SM-9OSVV 50-59 years, male 87.3
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 84.8
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 84.8
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Brain - Putamen (basal ganglia)
Average nTPM: 61.6
Samples: 205

Max nTPM: 96.6
Min nTPM: 45.7
Std nTPM: 8.0
Median nTPM: 60.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 96.6
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 94.8
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 87.2
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 85.1
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 81.0
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 80.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 78.6
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 77.2
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 74.8
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 74.7
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 74.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 52.3
FF:10164-103B2 76 years, female 52.3
Globus pallidus
Scaled Tags Per Million: 48.9
FF:10175-103C4 60 years, female 56.0
FF:10161-103A8 76 years, female 41.9
Nucleus accumbens
Scaled Tags Per Million: 68.0
FF:10037-101F1 23-56 years, mixed 68.0
Putamen
Scaled Tags Per Million: 68.5
FF:10176-103C5 60 years, female 68.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 38.7
Pig sample Sample description nTPM
Caudate
nTPM: 37.6
Samples: 4

Max nTPM: 41.9
Min nTPM: 31.9
Sample A Female 38.3
Sample B Female 38.3
Sample C Male 41.9
Sample D Male 31.9
Putamen
nTPM: 38.1
Samples: 4

Max nTPM: 46.4
Min nTPM: 34.2
Sample A Female 37.0
Sample B Female 34.9
Sample C Male 46.4
Sample D Male 34.2
Septum
nTPM: 38.7
Samples: 4

Max nTPM: 45.7
Min nTPM: 32.5
Sample A Female 45.7
Sample B Female 37.6
Sample C Male 39.1
Sample D Male 32.5
Ventral pallidum
nTPM: 37.4
Samples: 4

Max nTPM: 41.9
Min nTPM: 34.2
Sample A Female 41.9
Sample B Female 38.8
Sample C Male 34.7
Sample D Male 34.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 50.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 48.7
Samples: 4

Max nTPM: 50.0
Min nTPM: 46.7
Sample A Male 50.0
Sample B Male 46.7
Sample C Female 49.0
Sample D Female 49.1
Septum
nTPM: 48.2
Samples: 4

Max nTPM: 53.3
Min nTPM: 43.5
Sample A Male 53.3
Sample B Male 49.5
Sample C Female 46.6
Sample D Female 43.5
Ventral forebrain
nTPM: 50.7
Samples: 4

Max nTPM: 51.9
Min nTPM: 48.4
Sample A Male 51.9
Sample B Male 48.4
Sample C Female 50.8
Sample D Female 51.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
71495771 Antisense, RP_050913_03_E10, Mouse strain C57BL/6J (56 days, male) 0.3
74562606 Antisense, RP_060208_02_G10, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.2
71495771 Antisense, RP_050913_03_E10, Mouse strain C57BL/6J (56 days, male) 0.3
74562606 Antisense, RP_060208_02_G10, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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