MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:24.1 nTPM
HPA:24.1 nTPM
GTEx:25.8 nTPM
FANTOM5:101.8 Scaled Tags Per Million
Pig:59.4 nTPM
Mouse:54.0 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.9
2586 Male, age 75, left hemisphere 32.1
1827 Male, age 72, unknown 20.3
2666 Male, age 74, left hemisphere 20.0
2828 Female, age 72, unknown 17.5
1870 Female, age 42, unknown 16.9
1833 Male, age 53, unknown 16.2
1830 Male, age 51, unknown 15.7
2219 Male, age 76, both hemispheres 14.9
2411 Female, age 72, unknown 14.1
2019 Male, age 18, unknown 11.9
Dorsal raphe nucleus
nTPM: 18.3
2016 Female, age 72, unknown 22.2
1828 Male, age 53, unknown 21.2
2298 Female, age 72, unknown 19.6
2047 Male, age 72, unknown 18.0
2750 Male, age 76, both hemispheres 10.6
Inferior colliculus
nTPM: 20.1
2849 Male, age 72, unknown 25.2
1848 Female, age 42, unknown 19.6
2097 Female, age 72, unknown 18.7
1890 Male, age 53, unknown 17.1
Median raphe nucleus
nTPM: 15.1
2220 Male, age 76, midline 15.1
Pedunculopontine tegmental nucleus
nTPM: 12.7
1921 Female, age 85, both hemispheres 16.2
2334 Male, age 80, both hemispheres 13.8
2338 Male, age 61, both hemispheres 8.0
Periaquaductal grey, anterior
nTPM: 21.5
2502 Female, age 75, unknown 22.1
1947 Male, age 18, unknown 21.4
1795 Male, age 51, unknown 21.1
Periaquaductal grey, dorsal
nTPM: 24.1
1840 Male, age 53, unknown 30.0
2850 Male, age 76, both hemispheres 27.7
1831 Male, age 72, unknown 21.3
2464 Female, age 72, unknown 17.3
Periaquaductal grey, lateral
nTPM: 20.2
2140 Male, age 76, both hemispheres 21.9
2053 Male, age 18, unknown 21.6
2272 Male, age 74, both hemispheres 17.1
Pretectal area
nTPM: 20.1
2825 Male, age 18, unknown 22.7
1944 Female, age 72, unknown 22.5
2224 Female, age 72, unknown 22.3
2407 Male, age 75, both hemispheres 22.1
1816 Male, age 51, unknown 21.9
2667 Female, age 75, unknown 21.3
1817 Female, age 42, unknown 20.9
2273 Male, age 74, both hemispheres 20.9
1815 Male, age 53, unknown 20.1
2007 Male, age 72, unknown 15.0
2316 Male, age 76, right hemisphere 12.0
Red nucleus
nTPM: 12.4
2588 Male, age 74, left hemisphere 15.7
1821 Female, age 72, unknown 15.2
2503 Female, age 72, unknown 14.2
2584 Male, age 75, left hemisphere 14.1
2769 Male, age 72, unknown 12.6
2227 Male, age 72, unknown 12.4
1865 Male, age 51, unknown 11.9
1954 Female, age 42, unknown 11.6
2725 Female, age 75, unknown 11.6
1904 Male, age 53, unknown 11.4
2785 Male, age 18, unknown 10.5
2823 Male, age 76, right hemisphere 8.0
Substantia nigra
nTPM: 17.2
2665 Male, age 74, both hemispheres 22.0
2583 Male, age 75, right hemisphere 21.9
2699 Male, age 18, unknown 21.9
1851 Male, age 51, unknown 19.7
1916 Female, age 42, unknown 19.3
1889 Female, age 72, unknown 15.4
2241 Male, age 72, unknown 15.4
1941 Male, age 53, unknown 14.3
2590 Female, age 75, unknown 14.2
2409 Female, age 72, unknown 8.2
Superior colliculus
nTPM: 19.8
2664 Male, age 75, both hemispheres 30.6
2587 Male, age 74, left hemisphere 22.0
2668 Female, age 75, unknown 21.8
1995 Male, age 72, unknown 21.1
1839 Male, age 51, unknown 19.9
2261 Male, age 18, unknown 19.7
1796 Male, age 53, unknown 18.2
2087 Female, age 72, unknown 16.2
1913 Female, age 42, unknown 14.5
1895 Male, age 76, right hemisphere 13.6
Ventral tegmental area
nTPM: 16.9
2223 Female, age 72, unknown 20.5
1915 Female, age 42, unknown 18.4
2021 Male, age 53, unknown 18.3
1942 Male, age 51, unknown 15.1
2218 Male, age 76, both hemispheres 15.0
2410 Female, age 72, unknown 14.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.8
Samples: 139

Max nTPM: 41.4
Min nTPM: 17.0
Std nTPM: 4.8
Median nTPM: 25.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 41.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 38.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 38.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 38.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 38.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 37.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 35.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 34.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 34.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 34.4
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 33.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 101.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 101.8
FF:10158-103A5 76 years, female 101.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 59.4
Pig sample Sample description nTPM
Midbrain
nTPM: 59.4
Samples: 4

Max nTPM: 68.3
Min nTPM: 54.7
Sample A Female 68.3
Sample B Female 54.7
Sample C Male 59.5
Sample D Male 55.1
Periaqueductal gray
nTPM: 50.9
Samples: 3

Max nTPM: 53.6
Min nTPM: 46.6
Sample B Female 53.6
Sample C Male 52.4
Sample D Male 46.6
Substantia nigra
nTPM: 51.5
Samples: 4

Max nTPM: 60.1
Min nTPM: 42.0
Sample A Female 60.1
Sample B Female 42.0
Sample C Male 53.4
Sample D Male 50.3
Superior colliculi
nTPM: 47.3
Samples: 4

Max nTPM: 55.9
Min nTPM: 30.6
Sample A Female 55.9
Sample B Female 30.6
Sample C Male 50.4
Sample D Male 52.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 54.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 54.1
Samples: 4

Max nTPM: 58.2
Min nTPM: 47.4
Sample A Male 47.4
Sample B Male 54.8
Sample C Female 58.2
Sample D Female 55.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
69514636 Antisense, RP_050419_03_G05, Mouse strain C57BL/6J (56 days, male) 2.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.