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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:59.6 nTPM
HPA:59.6 nTPM
GTEx:49.8 nTPM
FANTOM5:207.5 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 59.6
overview
Male, age 65
Small intestine sample 232
nTPM: 68.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 60.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 48.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 60.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 49.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 49.8
Samples: 187

Max nTPM: 162.8
Min nTPM: 14.7
Std nTPM: 30.7
Median nTPM: 37.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 162.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 147.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 137.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 122.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 120.5
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 120.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 119.7
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 117.0
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 116.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 115.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 112.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 111.5
GTEX-YFCO-1326-SM-664NV 40-49 years, male 108.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 108.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 105.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 105.0
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 103.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 102.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 100.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 98.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 97.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 93.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 92.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 92.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 88.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 86.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 86.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 84.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 84.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 84.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 82.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 82.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 82.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 82.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 80.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 80.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 77.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 76.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 73.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 72.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 71.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 69.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 68.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 68.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 66.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 65.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 64.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 64.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 64.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 62.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 62.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 62.4
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 61.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 61.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 59.9
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 57.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 56.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 56.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 55.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 55.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 55.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 55.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 54.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 54.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 53.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 53.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 53.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 52.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 51.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 51.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 51.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 50.9
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 50.6
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 50.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 49.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 48.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 47.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 47.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 45.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 42.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 42.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 41.7
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 41.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 40.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 40.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 40.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 40.0
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 39.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 39.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 38.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 38.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 38.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 37.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 37.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 36.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 35.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 35.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 35.3
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 35.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 34.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 34.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 34.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 34.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 34.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 33.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 32.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 32.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 31.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 31.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 30.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 30.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 30.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 30.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 30.4
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 30.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 29.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 29.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 29.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 28.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 28.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 28.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 27.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 27.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 27.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 27.8
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 27.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 27.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 27.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 27.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 27.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 27.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 27.1
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 27.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 26.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 26.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 26.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 26.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 26.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 26.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 26.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 26.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 26.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 26.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 26.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 26.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 26.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 26.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 26.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 25.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 25.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 25.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 25.7
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 25.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 25.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 25.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 25.2
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 25.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 25.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 24.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 24.5
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 24.0
GTEX-1192X-2526-SM-59868 50-59 years, male 23.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 23.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 23.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 23.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 23.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 23.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 23.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 22.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 22.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 22.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 22.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 22.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 21.7
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 21.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 20.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 20.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 20.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 19.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 19.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 18.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 18.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 17.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 17.3
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 17.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 17.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 14.7
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 207.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 207.5
FF:10024-101D6 15,40,85 years, mixed 207.5

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