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GABARAPL1
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  • GABARAPL1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:115.0 nTPM
HPA:115.0 nTPM
GTEx:176.0 nTPM
FANTOM5:242.8 Scaled Tags Per Million
Pig:129.7 nTPM
Mouse:664.6 nTPM
Allen mouse:27.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 115.0
Sample id Sample description nTPM
Amygdala
nTPM: 80.7
2814 Male, age 76, right hemisphere 118.6
1987 Female, age 91, left hemisphere 85.6
2517 Female, age 94, left hemisphere 69.8
2514 Male, age 75, right hemisphere 65.6
2695 Female, age 67, right hemisphere 64.1
Basal amygdala
nTPM: 87.8
2243 Female, age 91, right hemisphere 118.8
2110 Male, age 80, left hemisphere 104.3
2685 Female, age 94, left hemisphere 90.2
1955 Male, age 76, both hemispheres 85.2
2609 Male, age 75, right hemisphere 71.8
2827 Female, age 67, right hemisphere 56.3
Central amygdala
nTPM: 92.6
1905 Male, age 76, both hemispheres 110.5
2826 Female, age 94, left hemisphere 101.5
2701 Female, age 91, right hemisphere 94.2
2239 Male, age 80, left hemisphere 88.8
2515 Male, age 75, right hemisphere 67.9
Corticomedial amygdala
nTPM: 84.4
2829 Male, age 80, left hemisphere 119.3
2242 Female, age 91, right hemisphere 114.7
2240 Male, age 76, both hemispheres 74.3
2535 Female, age 67, right hemisphere 73.3
2429 Female, age 94, left hemisphere 69.0
2428 Male, age 75, right hemisphere 55.7
Lateral amygdala
nTPM: 85.3
1883 Male, age 76, both hemispheres 120.5
2534 Female, age 94, left hemisphere 104.3
2255 Female, age 91, right hemisphere 94.6
2256 Male, age 80, left hemisphere 66.7
2516 Male, age 75, right hemisphere 66.2
2830 Female, age 67, right hemisphere 59.3
Stria terminalis, bed nucleus
nTPM: 115.0
1974 Female, age 91, both hemispheres 151.7
2486 Female, age 94, both hemispheres 122.5
2201 Male, age 74, unknown 70.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 176.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 176.0
Samples: 152

Max nTPM: 513.6
Min nTPM: 59.2
Std nTPM: 86.9
Median nTPM: 143.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 513.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 468.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 435.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 406.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 387.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 368.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 347.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 345.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 341.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 339.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 326.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 321.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 319.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 319.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 299.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 297.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 289.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 285.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 283.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 282.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 279.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 271.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 268.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 266.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 259.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 257.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 255.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 248.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 248.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 242.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 242.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 241.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 237.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 237.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 229.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 225.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 224.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 222.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 220.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 219.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 219.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 218.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 213.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 212.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 212.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 211.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 209.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 200.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 197.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 197.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 196.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 190.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 188.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 186.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 182.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 180.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 174.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 174.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 173.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 173.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 172.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 171.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 170.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 169.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 164.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 163.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 156.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 155.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 154.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 151.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 150.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 149.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 146.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 146.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 145.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 143.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 143.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 143.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 143.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 141.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 141.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 140.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 140.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 139.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 139.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 136.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 135.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 135.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 134.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 133.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 133.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 130.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 130.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 126.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 126.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 126.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 126.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 125.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 125.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 125.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 124.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 122.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 121.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 120.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 120.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 118.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 118.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 116.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 116.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 116.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 115.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 114.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 114.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 114.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 111.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 110.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 110.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 107.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 107.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 105.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 105.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 102.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 102.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 102.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 99.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 99.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 98.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 98.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 98.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 97.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 97.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 96.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 95.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 95.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 94.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 94.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 94.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 92.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 90.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 89.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 88.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 87.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 87.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 86.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 86.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 84.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 81.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 78.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 77.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 77.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 77.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 59.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 242.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 242.8
FF:10151-102I7 76 years, female 242.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 129.7
Pig sample Sample description nTPM
Amygdala
nTPM: 129.7
Samples: 4

Max nTPM: 193.3
Min nTPM: 99.6
Sample A Female 193.3
Sample B Female 123.7
Sample C Male 99.6
Sample D Male 102.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 664.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 664.6
Samples: 4

Max nTPM: 711.3
Min nTPM: 621.1
Sample A Male 711.3
Sample B Male 687.8
Sample C Female 621.1
Sample D Female 638.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 27.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 27.3
71608204 Antisense, RP_050927_01_A12, Mouse strain C57BL/6J (56 days, male) 31.5
654925 Antisense, RP_040922_01_A11, Mouse strain C57BL/6J (56 days, male) 23.2

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