MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:105.6 nTPM
HPA:105.6 nTPM
GTEx:168.4 nTPM
FANTOM5:127.9 Scaled Tags Per Million
Pig:287.0 nTPM
Mouse:648.3 nTPM
Allen mouse:21.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 105.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 83.6
2666 Male, age 74, left hemisphere 107.4
1827 Male, age 72, unknown 97.3
2019 Male, age 18, unknown 92.7
2586 Male, age 75, left hemisphere 90.7
2411 Female, age 72, unknown 85.2
2828 Female, age 72, unknown 78.3
2219 Male, age 76, both hemispheres 76.8
1870 Female, age 42, unknown 73.1
1833 Male, age 53, unknown 72.7
1830 Male, age 51, unknown 61.3
Dorsal raphe nucleus
nTPM: 90.3
2298 Female, age 72, unknown 111.9
1828 Male, age 53, unknown 104.1
2047 Male, age 72, unknown 92.8
2750 Male, age 76, both hemispheres 78.8
2016 Female, age 72, unknown 63.8
Inferior colliculus
nTPM: 81.7
2097 Female, age 72, unknown 89.0
1890 Male, age 53, unknown 87.3
1848 Female, age 42, unknown 79.9
2849 Male, age 72, unknown 70.7
Median raphe nucleus
nTPM: 96.2
2220 Male, age 76, midline 96.2
Pedunculopontine tegmental nucleus
nTPM: 84.5
1921 Female, age 85, both hemispheres 94.6
2334 Male, age 80, both hemispheres 91.6
2338 Male, age 61, both hemispheres 67.4
Periaquaductal grey, anterior
nTPM: 81.5
1947 Male, age 18, unknown 90.5
1795 Male, age 51, unknown 86.5
2502 Female, age 75, unknown 67.7
Periaquaductal grey, dorsal
nTPM: 66.2
1831 Male, age 72, unknown 73.0
1840 Male, age 53, unknown 69.0
2850 Male, age 76, both hemispheres 67.0
2464 Female, age 72, unknown 55.7
Periaquaductal grey, lateral
nTPM: 67.4
2053 Male, age 18, unknown 72.2
2272 Male, age 74, both hemispheres 66.3
2140 Male, age 76, both hemispheres 63.6
Pretectal area
nTPM: 96.6
1944 Female, age 72, unknown 133.8
1817 Female, age 42, unknown 132.5
1816 Male, age 51, unknown 128.7
2007 Male, age 72, unknown 124.9
1815 Male, age 53, unknown 101.4
2667 Female, age 75, unknown 100.7
2224 Female, age 72, unknown 76.2
2825 Male, age 18, unknown 72.3
2407 Male, age 75, both hemispheres 67.5
2273 Male, age 74, both hemispheres 64.3
2316 Male, age 76, right hemisphere 60.3
Red nucleus
nTPM: 71.5
1821 Female, age 72, unknown 93.2
2584 Male, age 75, left hemisphere 83.4
2725 Female, age 75, unknown 81.2
2785 Male, age 18, unknown 80.0
2588 Male, age 74, left hemisphere 77.8
1954 Female, age 42, unknown 69.2
2823 Male, age 76, right hemisphere 69.0
2503 Female, age 72, unknown 67.6
2769 Male, age 72, unknown 61.6
2227 Male, age 72, unknown 61.0
1904 Male, age 53, unknown 58.2
1865 Male, age 51, unknown 56.3
Substantia nigra
nTPM: 105.6
1916 Female, age 42, unknown 150.5
2241 Male, age 72, unknown 125.5
1889 Female, age 72, unknown 125.1
1941 Male, age 53, unknown 118.1
1851 Male, age 51, unknown 115.3
2583 Male, age 75, right hemisphere 91.8
2409 Female, age 72, unknown 84.6
2699 Male, age 18, unknown 84.6
2665 Male, age 74, both hemispheres 80.6
2590 Female, age 75, unknown 79.9
Superior colliculus
nTPM: 81.0
2087 Female, age 72, unknown 99.5
2668 Female, age 75, unknown 99.2
1895 Male, age 76, right hemisphere 96.9
1796 Male, age 53, unknown 88.8
2587 Male, age 74, left hemisphere 85.7
2261 Male, age 18, unknown 82.9
1839 Male, age 51, unknown 79.1
2664 Male, age 75, both hemispheres 69.7
1913 Female, age 42, unknown 55.4
1995 Male, age 72, unknown 52.4
Ventral tegmental area
nTPM: 90.2
1915 Female, age 42, unknown 122.5
2218 Male, age 76, both hemispheres 104.7
2410 Female, age 72, unknown 99.2
1942 Male, age 51, unknown 87.9
2021 Male, age 53, unknown 64.9
2223 Female, age 72, unknown 62.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 168.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 168.4
Samples: 139

Max nTPM: 498.9
Min nTPM: 58.3
Std nTPM: 94.9
Median nTPM: 133.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 498.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 479.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 474.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 447.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 435.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 415.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 407.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 389.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 357.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 328.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 320.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 127.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 127.9
FF:10158-103A5 76 years, female 127.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 287.0
Pig sample Sample description nTPM
Midbrain
nTPM: 260.9
Samples: 4

Max nTPM: 292.7
Min nTPM: 225.6
Sample A Female 250.2
Sample B Female 225.6
Sample C Male 275.2
Sample D Male 292.7
Periaqueductal gray
nTPM: 195.4
Samples: 3

Max nTPM: 213.8
Min nTPM: 170.8
Sample B Female 201.6
Sample C Male 213.8
Sample D Male 170.8
Substantia nigra
nTPM: 225.6
Samples: 4

Max nTPM: 318.0
Min nTPM: 158.5
Sample A Female 318.0
Sample B Female 158.5
Sample C Male 250.8
Sample D Male 175.0
Superior colliculi
nTPM: 287.0
Samples: 4

Max nTPM: 375.4
Min nTPM: 164.4
Sample A Female 375.4
Sample B Female 164.4
Sample C Male 328.7
Sample D Male 279.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 648.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 648.3
Samples: 4

Max nTPM: 677.8
Min nTPM: 612.9
Sample A Male 641.2
Sample B Male 661.3
Sample C Female 612.9
Sample D Female 677.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 21.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.1
71608204 Antisense, RP_050927_01_A12, Mouse strain C57BL/6J (56 days, male) 23.7
654925 Antisense, RP_040922_01_A11, Mouse strain C57BL/6J (56 days, male) 18.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.