MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:46.6 nTPM
HPA:46.6 nTPM
GTEx:41.6 nTPM
FANTOM5:42.0 Scaled Tags Per Million
Pig:72.4 nTPM
Mouse:95.5 nTPM
Allen mouse:3.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 46.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.0
1827 Male, age 72, unknown 40.3
2411 Female, age 72, unknown 39.1
2666 Male, age 74, left hemisphere 37.9
2219 Male, age 76, both hemispheres 37.0
2019 Male, age 18, unknown 35.7
1870 Female, age 42, unknown 34.7
1833 Male, age 53, unknown 32.0
1830 Male, age 51, unknown 29.3
2828 Female, age 72, unknown 28.8
2586 Male, age 75, left hemisphere 25.7
Dorsal raphe nucleus
nTPM: 40.4
2047 Male, age 72, unknown 50.1
2750 Male, age 76, both hemispheres 42.5
2298 Female, age 72, unknown 42.3
1828 Male, age 53, unknown 41.4
2016 Female, age 72, unknown 26.0
Inferior colliculus
nTPM: 33.3
1848 Female, age 42, unknown 37.3
2097 Female, age 72, unknown 33.9
2849 Male, age 72, unknown 33.7
1890 Male, age 53, unknown 28.2
Median raphe nucleus
nTPM: 46.6
2220 Male, age 76, midline 46.6
Pedunculopontine tegmental nucleus
nTPM: 39.5
2334 Male, age 80, both hemispheres 50.1
1921 Female, age 85, both hemispheres 40.2
2338 Male, age 61, both hemispheres 28.2
Periaquaductal grey, anterior
nTPM: 38.9
1947 Male, age 18, unknown 44.4
2502 Female, age 75, unknown 38.0
1795 Male, age 51, unknown 34.3
Periaquaductal grey, dorsal
nTPM: 32.7
1840 Male, age 53, unknown 33.9
1831 Male, age 72, unknown 33.4
2850 Male, age 76, both hemispheres 32.2
2464 Female, age 72, unknown 31.3
Periaquaductal grey, lateral
nTPM: 26.7
2053 Male, age 18, unknown 28.6
2140 Male, age 76, both hemispheres 28.2
2272 Male, age 74, both hemispheres 23.3
Pretectal area
nTPM: 38.8
1816 Male, age 51, unknown 51.6
1944 Female, age 72, unknown 48.3
2007 Male, age 72, unknown 46.0
1817 Female, age 42, unknown 44.4
1815 Male, age 53, unknown 40.8
2667 Female, age 75, unknown 40.4
2224 Female, age 72, unknown 36.7
2273 Male, age 74, both hemispheres 32.0
2825 Male, age 18, unknown 31.6
2407 Male, age 75, both hemispheres 28.8
2316 Male, age 76, right hemisphere 25.7
Red nucleus
nTPM: 30.4
1821 Female, age 72, unknown 41.7
2725 Female, age 75, unknown 35.1
2588 Male, age 74, left hemisphere 32.2
1954 Female, age 42, unknown 31.2
2785 Male, age 18, unknown 31.1
1865 Male, age 51, unknown 30.7
2823 Male, age 76, right hemisphere 29.8
2503 Female, age 72, unknown 29.0
2227 Male, age 72, unknown 27.6
2769 Male, age 72, unknown 27.5
1904 Male, age 53, unknown 24.6
2584 Male, age 75, left hemisphere 24.6
Substantia nigra
nTPM: 41.7
1941 Male, age 53, unknown 59.1
1916 Female, age 42, unknown 55.6
2409 Female, age 72, unknown 50.1
1889 Female, age 72, unknown 47.2
1851 Male, age 51, unknown 46.5
2241 Male, age 72, unknown 41.0
2699 Male, age 18, unknown 35.2
2583 Male, age 75, right hemisphere 30.3
2590 Female, age 75, unknown 29.0
2665 Male, age 74, both hemispheres 22.7
Superior colliculus
nTPM: 32.1
1895 Male, age 76, right hemisphere 40.1
2587 Male, age 74, left hemisphere 39.0
2087 Female, age 72, unknown 37.9
2668 Female, age 75, unknown 36.1
1796 Male, age 53, unknown 33.8
1839 Male, age 51, unknown 32.6
2261 Male, age 18, unknown 32.5
2664 Male, age 75, both hemispheres 26.0
1913 Female, age 42, unknown 24.9
1995 Male, age 72, unknown 18.2
Ventral tegmental area
nTPM: 38.2
2218 Male, age 76, both hemispheres 48.6
2410 Female, age 72, unknown 47.8
1915 Female, age 42, unknown 40.9
2223 Female, age 72, unknown 32.9
2021 Male, age 53, unknown 29.9
1942 Male, age 51, unknown 29.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 41.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41.6
Samples: 139

Max nTPM: 144.6
Min nTPM: 16.5
Std nTPM: 21.0
Median nTPM: 35.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 144.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 128.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 116.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 101.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 86.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 81.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 74.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 74.2
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 73.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 67.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 66.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.0
FF:10158-103A5 76 years, female 42.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 72.4
Pig sample Sample description nTPM
Midbrain
nTPM: 72.4
Samples: 4

Max nTPM: 84.0
Min nTPM: 58.6
Sample A Female 58.6
Sample B Female 72.7
Sample C Male 84.0
Sample D Male 74.1
Periaqueductal gray
nTPM: 64.7
Samples: 3

Max nTPM: 76.0
Min nTPM: 58.2
Sample B Female 59.8
Sample C Male 76.0
Sample D Male 58.2
Substantia nigra
nTPM: 71.2
Samples: 4

Max nTPM: 100.9
Min nTPM: 39.7
Sample A Female 100.9
Sample B Female 50.9
Sample C Male 93.2
Sample D Male 39.7
Superior colliculi
nTPM: 68.3
Samples: 4

Max nTPM: 97.5
Min nTPM: 34.6
Sample A Female 69.4
Sample B Female 34.6
Sample C Male 97.5
Sample D Male 71.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 95.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 95.5
Samples: 4

Max nTPM: 113.1
Min nTPM: 81.5
Sample A Male 81.5
Sample B Male 96.6
Sample C Female 113.1
Sample D Female 90.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
70919991 Antisense, RP_050713_02_E03, Mouse strain C57BL/6J (56 days, male) 3.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.