BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:20.8 nTPM
HPA:20.8 nTPM
GTEx:31.7 nTPM
FANTOM5:151.2 Scaled Tags Per Million
Pig:90.0 nTPM
Mouse:253.0 nTPM
Allen mouse:19.7 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 20.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.2
1781 Male, age 74, unknown 2.3
1854 Male, age 80, left hemisphere 0.0
1857 Female, age 85, left hemisphere 0.0
2288 Male, age 75, left hemisphere 0.0
2289 Male, age 61, right hemisphere 0.0
2290 Female, age 72, unknown 0.0
2481 Female, age 94, left hemisphere 0.0
2846 Female, age 79, unknown 0.0
Claustrum
nTPM: 8.6
2491 Male, age 75, both hemispheres 18.1
2284 Female, age 91, both hemispheres 17.4
2568 Male, age 61, both hemispheres 15.5
2198 Male, age 80, both hemispheres 12.6
2392 Female, age 94, both hemispheres 7.3
2645 Female, age 72, unknown 6.5
1956 Male, age 74, unknown 0.0
2196 Female, age 79, unknown 0.0
2292 Female, age 85, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 0.6
1856 Female, age 91, right hemisphere 5.2
1783 Male, age 74, unknown 0.0
1806 Female, age 85, left hemisphere 0.0
2286 Male, age 75, left hemisphere 0.0
2391 Female, age 94, left hemisphere 0.0
2698 Female, age 72, unknown 0.0
2732 Male, age 80, right hemisphere 0.0
2824 Male, age 61, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.0
2393 Male, age 80, right hemisphere 0.0
2484 Female, age 94, left hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 16.1
2029 Male, age 61, right hemisphere 24.3
1812 Female, age 91, both hemispheres 21.4
2775 Male, age 80, right hemisphere 19.9
2195 Female, age 85, both hemispheres 13.0
1979 Male, age 74, unknown 1.8
Olfactory tubercle
nTPM: 20.8
1998 Female, age 91, both hemispheres 36.2
2487 Female, age 94, left hemisphere 22.9
2856 Male, age 75, right hemisphere 14.7
1846 Male, age 80, right hemisphere 9.6
Putamen
nTPM: 0.2
2466 Female, age 79, unknown 0.8
1937 Female, age 91, right hemisphere 0.6
1829 Male, age 74, unknown 0.0
1838 Male, age 80, right hemisphere 0.0
2482 Female, age 94, left hemisphere 0.0
2489 Female, age 72, unknown 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 12.1
2009 Female, age 91, both hemispheres 20.4
1960 Male, age 74, unknown 20.1
2031 Female, age 72, unknown 19.8
2629 Female, age 94, right hemisphere 18.2
2059 Female, age 85, both hemispheres 4.7
2394 Male, age 61, left hemisphere 1.5
2199 Male, age 80, right hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 31.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 29.7
Samples: 246

Max nTPM: 130.1
Min nTPM: 1.8
Std nTPM: 22.3
Median nTPM: 27.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 130.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 118.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 89.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 83.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 79.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 78.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 76.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 74.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 73.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 73.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 73.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 31.7
Samples: 246

Max nTPM: 150.2
Min nTPM: 0.2
Std nTPM: 21.1
Median nTPM: 30.3
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 150.2
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 85.3
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 79.8
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 78.7
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 73.3
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 73.0
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 72.6
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 71.1
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 70.9
GTEX-13OVL-0011-R6a-SM-5L3G4 50-59 years, male 69.0
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 68.7
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Brain - Putamen (basal ganglia)
Average nTPM: 25.6
Samples: 205

Max nTPM: 90.6
Min nTPM: 1.5
Std nTPM: 19.1
Median nTPM: 21.5
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 90.6
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 73.0
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 72.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 70.7
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 69.6
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 65.8
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 64.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 62.3
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 61.2
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 60.1
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 59.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 151.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 56.6
FF:10164-103B2 76 years, female 56.6
Globus pallidus
Scaled Tags Per Million: 33.3
FF:10175-103C4 60 years, female 51.3
FF:10161-103A8 76 years, female 15.3
Nucleus accumbens
Scaled Tags Per Million: 151.2
FF:10037-101F1 23-56 years, mixed 151.2
Putamen
Scaled Tags Per Million: 100.6
FF:10176-103C5 60 years, female 100.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 90.0
Pig sample Sample description nTPM
Caudate
nTPM: 56.3
Samples: 4

Max nTPM: 67.9
Min nTPM: 39.3
Sample A Female 39.3
Sample B Female 59.9
Sample C Male 67.9
Sample D Male 58.1
Putamen
nTPM: 67.1
Samples: 4

Max nTPM: 97.0
Min nTPM: 43.1
Sample A Female 43.1
Sample B Female 56.4
Sample C Male 97.0
Sample D Male 72.0
Septum
nTPM: 90.1
Samples: 4

Max nTPM: 162.9
Min nTPM: 52.2
Sample A Female 52.2
Sample B Female 61.4
Sample C Male 162.9
Sample D Male 83.7
Ventral pallidum
nTPM: 71.7
Samples: 4

Max nTPM: 155.8
Min nTPM: 40.5
Sample A Female 40.5
Sample B Female 48.6
Sample C Male 155.8
Sample D Male 41.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 253.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 178.8
Samples: 4

Max nTPM: 188.7
Min nTPM: 166.0
Sample A Male 176.3
Sample B Male 188.7
Sample C Female 166.0
Sample D Female 184.0
Septum
nTPM: 253.0
Samples: 4

Max nTPM: 261.0
Min nTPM: 245.3
Sample A Male 261.0
Sample B Male 256.3
Sample C Female 249.3
Sample D Female 245.3
Ventral forebrain
nTPM: 223.3
Samples: 4

Max nTPM: 245.3
Min nTPM: 190.3
Sample A Male 190.3
Sample B Male 245.3
Sample C Female 234.1
Sample D Female 223.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 19.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 19.6
69013572 Antisense, RP_050309_02_E12, Mouse strain C57BL/6J (56 days, male) 19.6
Pallidum
Expression energy: 19.7
69013572 Antisense, RP_050309_02_E12, Mouse strain C57BL/6J (56 days, male) 19.7

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The Human Protein Atlas

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