MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:26.5 nTPM
HPA:26.5 nTPM
GTEx:17.5 nTPM
FANTOM5:55.6 Scaled Tags Per Million
Pig:27.4 nTPM
Mouse:21.8 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.7
1830 Male, age 51, unknown 27.5
1833 Male, age 53, unknown 26.5
2019 Male, age 18, unknown 25.8
1870 Female, age 42, unknown 25.3
2411 Female, age 72, unknown 22.5
2666 Male, age 74, left hemisphere 22.5
2828 Female, age 72, unknown 22.0
2219 Male, age 76, both hemispheres 21.5
1827 Male, age 72, unknown 20.8
2586 Male, age 75, left hemisphere 12.6
Dorsal raphe nucleus
nTPM: 22.8
2016 Female, age 72, unknown 28.5
1828 Male, age 53, unknown 23.4
2750 Male, age 76, both hemispheres 22.1
2047 Male, age 72, unknown 21.4
2298 Female, age 72, unknown 18.5
Inferior colliculus
nTPM: 23.4
1890 Male, age 53, unknown 26.5
2097 Female, age 72, unknown 23.2
2849 Male, age 72, unknown 22.6
1848 Female, age 42, unknown 21.2
Median raphe nucleus
nTPM: 21.8
2220 Male, age 76, midline 21.8
Pedunculopontine tegmental nucleus
nTPM: 25.3
2338 Male, age 61, both hemispheres 32.2
1921 Female, age 85, both hemispheres 22.3
2334 Male, age 80, both hemispheres 21.4
Periaquaductal grey, anterior
nTPM: 18.9
1947 Male, age 18, unknown 20.8
2502 Female, age 75, unknown 18.8
1795 Male, age 51, unknown 17.2
Periaquaductal grey, dorsal
nTPM: 26.5
2850 Male, age 76, both hemispheres 32.2
1831 Male, age 72, unknown 29.0
2464 Female, age 72, unknown 24.4
1840 Male, age 53, unknown 20.4
Periaquaductal grey, lateral
nTPM: 25.8
2140 Male, age 76, both hemispheres 29.1
2272 Male, age 74, both hemispheres 25.2
2053 Male, age 18, unknown 23.2
Pretectal area
nTPM: 22.1
2316 Male, age 76, right hemisphere 24.6
2273 Male, age 74, both hemispheres 24.5
1815 Male, age 53, unknown 24.4
2407 Male, age 75, both hemispheres 23.1
2667 Female, age 75, unknown 23.1
1944 Female, age 72, unknown 22.1
2224 Female, age 72, unknown 22.0
2007 Male, age 72, unknown 20.3
1817 Female, age 42, unknown 20.2
2825 Male, age 18, unknown 19.8
1816 Male, age 51, unknown 18.7
Red nucleus
nTPM: 26.1
2823 Male, age 76, right hemisphere 32.2
1954 Female, age 42, unknown 29.5
1865 Male, age 51, unknown 29.0
2503 Female, age 72, unknown 27.7
1904 Male, age 53, unknown 27.0
1821 Female, age 72, unknown 25.5
2227 Male, age 72, unknown 25.2
2588 Male, age 74, left hemisphere 24.9
2785 Male, age 18, unknown 24.6
2769 Male, age 72, unknown 24.1
2725 Female, age 75, unknown 23.7
2584 Male, age 75, left hemisphere 20.0
Substantia nigra
nTPM: 22.4
2699 Male, age 18, unknown 26.7
2590 Female, age 75, unknown 25.2
2409 Female, age 72, unknown 24.9
2583 Male, age 75, right hemisphere 23.5
2665 Male, age 74, both hemispheres 22.7
2241 Male, age 72, unknown 22.6
1941 Male, age 53, unknown 21.3
1889 Female, age 72, unknown 20.9
1851 Male, age 51, unknown 19.1
1916 Female, age 42, unknown 17.3
Superior colliculus
nTPM: 22.8
1995 Male, age 72, unknown 28.3
1913 Female, age 42, unknown 27.6
1895 Male, age 76, right hemisphere 25.4
2587 Male, age 74, left hemisphere 24.8
1839 Male, age 51, unknown 24.6
2087 Female, age 72, unknown 21.6
2668 Female, age 75, unknown 21.1
2261 Male, age 18, unknown 19.4
1796 Male, age 53, unknown 17.7
2664 Male, age 75, both hemispheres 17.2
Ventral tegmental area
nTPM: 21.2
2223 Female, age 72, unknown 23.0
2021 Male, age 53, unknown 22.3
2218 Male, age 76, both hemispheres 21.4
2410 Female, age 72, unknown 20.9
1942 Male, age 51, unknown 20.5
1915 Female, age 42, unknown 19.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.5
Samples: 139

Max nTPM: 28.8
Min nTPM: 12.1
Std nTPM: 3.1
Median nTPM: 17.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 28.8
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 27.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 26.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 25.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 24.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 24.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 23.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 23.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 22.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 22.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 22.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.6
FF:10158-103A5 76 years, female 55.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.4
Pig sample Sample description nTPM
Midbrain
nTPM: 27.0
Samples: 4

Max nTPM: 35.1
Min nTPM: 21.9
Sample A Female 35.1
Sample B Female 28.4
Sample C Male 21.9
Sample D Male 22.6
Periaqueductal gray
nTPM: 26.8
Samples: 3

Max nTPM: 29.1
Min nTPM: 23.9
Sample B Female 27.3
Sample C Male 23.9
Sample D Male 29.1
Substantia nigra
nTPM: 27.4
Samples: 4

Max nTPM: 31.3
Min nTPM: 23.7
Sample A Female 23.7
Sample B Female 30.1
Sample C Male 24.5
Sample D Male 31.3
Superior colliculi
nTPM: 26.1
Samples: 4

Max nTPM: 29.4
Min nTPM: 24.1
Sample A Female 25.7
Sample B Female 29.4
Sample C Male 24.1
Sample D Male 25.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.8
Samples: 4

Max nTPM: 23.4
Min nTPM: 19.2
Sample A Male 19.2
Sample B Male 23.2
Sample C Female 23.4
Sample D Female 21.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
77799019 Antisense, RP_070212_03_C05, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.