BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:13.5 nTPM
HPA:13.5 nTPM
GTEx:13.6 nTPM
FANTOM5:40.4 Scaled Tags Per Million
Pig:5.2 nTPM
Mouse:19.2 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 13.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 12.4
2481 Female, age 94, left hemisphere 14.0
2288 Male, age 75, left hemisphere 13.2
2846 Female, age 79, unknown 12.8
2290 Female, age 72, unknown 12.2
1854 Male, age 80, left hemisphere 12.1
2289 Male, age 61, right hemisphere 12.0
1857 Female, age 85, left hemisphere 11.7
1781 Male, age 74, unknown 11.1
Claustrum
nTPM: 12.5
2196 Female, age 79, unknown 13.4
2292 Female, age 85, both hemispheres 13.1
1956 Male, age 74, unknown 12.9
2392 Female, age 94, both hemispheres 12.7
2198 Male, age 80, both hemispheres 12.6
2568 Male, age 61, both hemispheres 12.1
2645 Female, age 72, unknown 12.1
2284 Female, age 91, both hemispheres 11.9
2491 Male, age 75, both hemispheres 11.7
Globus pallidus, externus
nTPM: 12.8
2395 Male, age 75, both hemispheres 13.1
2772 Female, age 79, unknown 13.0
1996 Male, age 80, right hemisphere 12.8
2567 Female, age 72, unknown 12.8
2646 Male, age 61, right hemisphere 12.2
Globus pallidus, internus
nTPM: 13.5
2287 Male, age 75, right hemisphere 14.7
1818 Male, age 74, unknown 13.9
2111 Female, age 85, right hemisphere 13.9
2778 Female, age 91, both hemispheres 13.4
2037 Male, age 80, right hemisphere 13.1
2483 Female, age 94, right hemisphere 12.6
2566 Female, age 72, unknown 12.6
Nucleus accumbens
nTPM: 12.1
2391 Female, age 94, left hemisphere 14.2
2286 Male, age 75, left hemisphere 12.7
2698 Female, age 72, unknown 12.7
2732 Male, age 80, right hemisphere 11.6
1806 Female, age 85, left hemisphere 11.5
1783 Male, age 74, unknown 11.3
1856 Female, age 91, right hemisphere 11.3
2824 Male, age 61, right hemisphere 11.2
Nucleus basalis of Meynert
nTPM: 12.5
2821 Male, age 75, both hemispheres 13.0
2393 Male, age 80, right hemisphere 12.4
2484 Female, age 94, left hemisphere 12.4
2569 Male, age 61, both hemispheres 12.2
Nucleus of the diagonal band
nTPM: 12.0
2195 Female, age 85, both hemispheres 12.8
1812 Female, age 91, both hemispheres 12.2
2775 Male, age 80, right hemisphere 12.1
1979 Male, age 74, unknown 11.7
2029 Male, age 61, right hemisphere 11.4
Olfactory tubercle
nTPM: 12.0
2856 Male, age 75, right hemisphere 12.8
1846 Male, age 80, right hemisphere 12.2
1998 Female, age 91, both hemispheres 11.7
2487 Female, age 94, left hemisphere 11.4
Putamen
nTPM: 12.4
2482 Female, age 94, left hemisphere 13.4
1829 Male, age 74, unknown 13.2
2489 Female, age 72, unknown 12.4
1838 Male, age 80, right hemisphere 12.2
2647 Male, age 75, left hemisphere 12.2
1937 Female, age 91, right hemisphere 11.6
2466 Female, age 79, unknown 11.5
Septal nuclei
nTPM: 11.9
2629 Female, age 94, right hemisphere 13.1
2199 Male, age 80, right hemisphere 12.4
2059 Female, age 85, both hemispheres 11.7
1960 Male, age 74, unknown 11.5
2031 Female, age 72, unknown 11.5
2009 Female, age 91, both hemispheres 11.4
2394 Male, age 61, left hemisphere 11.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 13.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 12.6
Samples: 246

Max nTPM: 22.8
Min nTPM: 7.0
Std nTPM: 2.6
Median nTPM: 12.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 22.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 22.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 22.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 20.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 20.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 20.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 20.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 19.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 18.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 18.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 17.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 12.0
Samples: 246

Max nTPM: 23.2
Min nTPM: 7.5
Std nTPM: 2.5
Median nTPM: 11.6
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 23.2
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 22.9
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 20.0
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 19.5
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 19.1
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 17.6
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 17.6
GTEX-S7SE-0011-R6A-SM-2XCD9 50-59 years, male 17.4
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 17.4
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 17.2
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 17.0
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Brain - Putamen (basal ganglia)
Average nTPM: 13.6
Samples: 205

Max nTPM: 26.3
Min nTPM: 8.0
Std nTPM: 2.8
Median nTPM: 13.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 26.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 23.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 22.9
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 22.2
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 21.9
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 20.4
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 20.2
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 20.1
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 19.5
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 19.4
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 19.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 40.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 29.4
FF:10164-103B2 76 years, female 29.4
Globus pallidus
Scaled Tags Per Million: 40.4
FF:10161-103A8 76 years, female 42.2
FF:10175-103C4 60 years, female 38.6
Nucleus accumbens
Scaled Tags Per Million: 23.7
FF:10037-101F1 23-56 years, mixed 23.7
Putamen
Scaled Tags Per Million: 25.1
FF:10176-103C5 60 years, female 25.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.2
Pig sample Sample description nTPM
Caudate
nTPM: 3.8
Samples: 4

Max nTPM: 4.3
Min nTPM: 3.4
Sample A Female 4.3
Sample B Female 3.4
Sample C Male 3.9
Sample D Male 3.5
Putamen
nTPM: 5.2
Samples: 4

Max nTPM: 6.4
Min nTPM: 4.5
Sample A Female 5.3
Sample B Female 4.6
Sample C Male 6.4
Sample D Male 4.5
Septum
nTPM: 4.9
Samples: 4

Max nTPM: 5.6
Min nTPM: 4.4
Sample A Female 4.9
Sample B Female 4.4
Sample C Male 5.6
Sample D Male 4.5
Ventral pallidum
nTPM: 4.5
Samples: 4

Max nTPM: 4.9
Min nTPM: 3.6
Sample A Female 4.7
Sample B Female 4.7
Sample C Male 4.9
Sample D Male 3.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 19.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 19.2
Samples: 4

Max nTPM: 21.9
Min nTPM: 16.4
Sample A Male 17.0
Sample B Male 21.9
Sample C Female 21.6
Sample D Female 16.4
Septum
nTPM: 16.3
Samples: 4

Max nTPM: 16.9
Min nTPM: 15.4
Sample A Male 15.4
Sample B Male 16.9
Sample C Female 15.9
Sample D Female 16.9
Ventral forebrain
nTPM: 18.7
Samples: 4

Max nTPM: 20.0
Min nTPM: 17.0
Sample A Male 17.0
Sample B Male 19.8
Sample C Female 20.0
Sample D Female 17.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
74427076 Antisense, RP_051206_03_A06, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
74427076 Antisense, RP_051206_03_A06, Mouse strain C57BL/6J (56 days, male) 0.0

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