BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:19.6 nTPM
HPA:19.6 nTPM
GTEx:24.7 nTPM
FANTOM5:83.5 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 19.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 19.5
2481 Female, age 94, left hemisphere 20.3
1857 Female, age 85, left hemisphere 19.8
2288 Male, age 75, left hemisphere 19.8
2846 Female, age 79, unknown 19.8
2290 Female, age 72, unknown 19.7
1854 Male, age 80, left hemisphere 19.2
1781 Male, age 74, unknown 18.9
2289 Male, age 61, right hemisphere 18.6
Claustrum
nTPM: 18.9
2392 Female, age 94, both hemispheres 19.6
1956 Male, age 74, unknown 19.2
2196 Female, age 79, unknown 19.1
2491 Male, age 75, both hemispheres 19.0
2292 Female, age 85, both hemispheres 18.9
2284 Female, age 91, both hemispheres 18.8
2198 Male, age 80, both hemispheres 18.6
2568 Male, age 61, both hemispheres 18.5
2645 Female, age 72, unknown 18.5
Globus pallidus, externus
nTPM: 18.9
1996 Male, age 80, right hemisphere 19.3
2395 Male, age 75, both hemispheres 19.3
2772 Female, age 79, unknown 18.9
2646 Male, age 61, right hemisphere 18.6
2567 Female, age 72, unknown 18.1
Globus pallidus, internus
nTPM: 19.1
2037 Male, age 80, right hemisphere 19.6
2287 Male, age 75, right hemisphere 19.6
2483 Female, age 94, right hemisphere 19.4
1818 Male, age 74, unknown 19.2
2778 Female, age 91, both hemispheres 18.8
2111 Female, age 85, right hemisphere 18.5
2566 Female, age 72, unknown 18.4
Nucleus accumbens
nTPM: 19.6
2391 Female, age 94, left hemisphere 20.1
2286 Male, age 75, left hemisphere 20.0
2698 Female, age 72, unknown 20.0
1856 Female, age 91, right hemisphere 19.8
2824 Male, age 61, right hemisphere 19.4
1783 Male, age 74, unknown 19.3
2732 Male, age 80, right hemisphere 19.3
1806 Female, age 85, left hemisphere 19.0
Nucleus basalis of Meynert
nTPM: 19.1
2393 Male, age 80, right hemisphere 19.4
2484 Female, age 94, left hemisphere 19.4
2569 Male, age 61, both hemispheres 18.8
2821 Male, age 75, both hemispheres 18.7
Nucleus of the diagonal band
nTPM: 19.5
1979 Male, age 74, unknown 20.3
2195 Female, age 85, both hemispheres 19.8
2775 Male, age 80, right hemisphere 19.6
1812 Female, age 91, both hemispheres 19.5
2029 Male, age 61, right hemisphere 18.3
Olfactory tubercle
nTPM: 19.1
1998 Female, age 91, both hemispheres 19.3
2487 Female, age 94, left hemisphere 19.1
2856 Male, age 75, right hemisphere 19.0
1846 Male, age 80, right hemisphere 18.9
Putamen
nTPM: 19.3
2482 Female, age 94, left hemisphere 20.0
1838 Male, age 80, right hemisphere 19.6
2466 Female, age 79, unknown 19.6
1829 Male, age 74, unknown 19.4
1937 Female, age 91, right hemisphere 19.3
2489 Female, age 72, unknown 19.2
2647 Male, age 75, left hemisphere 18.2
Septal nuclei
nTPM: 19.1
2031 Female, age 72, unknown 19.5
2199 Male, age 80, right hemisphere 19.3
2394 Male, age 61, left hemisphere 19.3
2009 Female, age 91, both hemispheres 19.2
2059 Female, age 85, both hemispheres 19.1
1960 Male, age 74, unknown 18.9
2629 Female, age 94, right hemisphere 18.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 24.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 22.0
Samples: 246

Max nTPM: 45.0
Min nTPM: 13.1
Std nTPM: 4.8
Median nTPM: 21.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 45.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 42.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 39.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 37.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 35.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 35.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 34.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 33.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 33.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 32.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 31.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 24.7
Samples: 246

Max nTPM: 47.5
Min nTPM: 15.5
Std nTPM: 5.5
Median nTPM: 24.0
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 47.5
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 46.8
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 43.1
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 42.4
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 39.1
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 38.9
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 38.5
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 36.9
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 36.6
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 35.7
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 34.8
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Brain - Putamen (basal ganglia)
Average nTPM: 23.0
Samples: 205

Max nTPM: 40.5
Min nTPM: 14.2
Std nTPM: 4.6
Median nTPM: 22.3
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 40.5
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 38.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 35.9
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 35.2
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 34.0
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 33.8
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 33.3
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 33.3
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 33.2
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 32.6
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 32.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 83.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 74.2
FF:10164-103B2 76 years, female 74.2
Globus pallidus
Scaled Tags Per Million: 79.5
FF:10175-103C4 60 years, female 89.9
FF:10161-103A8 76 years, female 69.2
Nucleus accumbens
Scaled Tags Per Million: 46.4
FF:10037-101F1 23-56 years, mixed 46.4
Putamen
Scaled Tags Per Million: 83.5
FF:10176-103C5 60 years, female 83.5

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