BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:4.8 nTPM
HPA:4.8 nTPM
GTEx:3.5 nTPM
FANTOM5:13.5 Scaled Tags Per Million
Pig:14.8 nTPM
Mouse:18.5 nTPM
Allen mouse:0.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA016713
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 4.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.2
2288 Male, age 75, left hemisphere 3.8
2481 Female, age 94, left hemisphere 3.7
2290 Female, age 72, unknown 3.5
2289 Male, age 61, right hemisphere 3.3
1857 Female, age 85, left hemisphere 3.2
2846 Female, age 79, unknown 2.7
1854 Male, age 80, left hemisphere 2.6
1781 Male, age 74, unknown 2.4
Claustrum
nTPM: 2.9
2292 Female, age 85, both hemispheres 3.9
2198 Male, age 80, both hemispheres 3.7
1956 Male, age 74, unknown 3.4
2491 Male, age 75, both hemispheres 2.9
2196 Female, age 79, unknown 2.8
2284 Female, age 91, both hemispheres 2.7
2392 Female, age 94, both hemispheres 2.6
2645 Female, age 72, unknown 2.0
2568 Male, age 61, both hemispheres 1.8
Globus pallidus, externus
nTPM: 4.8
1996 Male, age 80, right hemisphere 5.8
2772 Female, age 79, unknown 5.5
2395 Male, age 75, both hemispheres 5.2
2567 Female, age 72, unknown 3.8
2646 Male, age 61, right hemisphere 3.5
Globus pallidus, internus
nTPM: 4.6
2037 Male, age 80, right hemisphere 5.8
2111 Female, age 85, right hemisphere 5.1
1818 Male, age 74, unknown 4.6
2483 Female, age 94, right hemisphere 4.5
2778 Female, age 91, both hemispheres 4.4
2287 Male, age 75, right hemisphere 4.1
2566 Female, age 72, unknown 4.0
Nucleus accumbens
nTPM: 2.9
2732 Male, age 80, right hemisphere 4.2
2286 Male, age 75, left hemisphere 4.0
1806 Female, age 85, left hemisphere 3.1
2391 Female, age 94, left hemisphere 3.0
1783 Male, age 74, unknown 2.8
2698 Female, age 72, unknown 2.7
2824 Male, age 61, right hemisphere 2.0
1856 Female, age 91, right hemisphere 1.5
Nucleus basalis of Meynert
nTPM: 3.3
2484 Female, age 94, left hemisphere 4.0
2569 Male, age 61, both hemispheres 3.5
2393 Male, age 80, right hemisphere 3.4
2821 Male, age 75, both hemispheres 2.5
Nucleus of the diagonal band
nTPM: 2.5
1812 Female, age 91, both hemispheres 3.5
1979 Male, age 74, unknown 2.6
2195 Female, age 85, both hemispheres 2.4
2775 Male, age 80, right hemisphere 2.2
2029 Male, age 61, right hemisphere 2.1
Olfactory tubercle
nTPM: 2.4
2487 Female, age 94, left hemisphere 3.6
1846 Male, age 80, right hemisphere 2.2
2856 Male, age 75, right hemisphere 2.0
1998 Female, age 91, both hemispheres 1.9
Putamen
nTPM: 3.0
2482 Female, age 94, left hemisphere 3.6
2466 Female, age 79, unknown 3.4
1937 Female, age 91, right hemisphere 3.3
1829 Male, age 74, unknown 3.2
2489 Female, age 72, unknown 3.0
1838 Male, age 80, right hemisphere 2.5
2647 Male, age 75, left hemisphere 2.0
Septal nuclei
nTPM: 3.0
2394 Male, age 61, left hemisphere 4.1
2199 Male, age 80, right hemisphere 3.4
2059 Female, age 85, both hemispheres 3.2
2031 Female, age 72, unknown 2.9
2009 Female, age 91, both hemispheres 2.8
1960 Male, age 74, unknown 2.7
2629 Female, age 94, right hemisphere 2.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 3.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3.5
Samples: 246

Max nTPM: 7.9
Min nTPM: 1.3
Std nTPM: 1.1
Median nTPM: 3.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 7.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 7.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 6.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 6.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 6.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 6.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 5.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 5.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 5.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 5.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 5.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 2.7
Samples: 246

Max nTPM: 9.8
Min nTPM: 0.0
Std nTPM: 1.2
Median nTPM: 2.6
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 9.8
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 7.9
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 7.2
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 7.1
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 6.0
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 5.9
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 5.6
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 5.4
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 5.3
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 5.3
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 5.2
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Brain - Putamen (basal ganglia)
Average nTPM: 3.5
Samples: 205

Max nTPM: 8.6
Min nTPM: 0.5
Std nTPM: 1.2
Median nTPM: 3.4
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 8.6
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 7.5
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 6.6
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 6.5
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 6.5
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 6.5
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 6.2
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 6.0
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 6.0
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 5.8
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 5.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 11.5
FF:10164-103B2 76 years, female 11.5
Globus pallidus
Scaled Tags Per Million: 13.5
FF:10161-103A8 76 years, female 15.3
FF:10175-103C4 60 years, female 11.8
Nucleus accumbens
Scaled Tags Per Million: 12.8
FF:10037-101F1 23-56 years, mixed 12.8
Putamen
Scaled Tags Per Million: 12.4
FF:10176-103C5 60 years, female 12.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 14.8
Pig sample Sample description nTPM
Caudate
nTPM: 11.9
Samples: 4

Max nTPM: 13.3
Min nTPM: 10.4
Sample A Female 10.4
Sample B Female 13.3
Sample C Male 12.7
Sample D Male 11.3
Putamen
nTPM: 14.9
Samples: 4

Max nTPM: 17.5
Min nTPM: 12.6
Sample A Female 17.5
Sample B Female 12.6
Sample C Male 14.0
Sample D Male 15.3
Septum
nTPM: 13.9
Samples: 4

Max nTPM: 15.7
Min nTPM: 12.5
Sample A Female 14.3
Sample B Female 12.5
Sample C Male 15.7
Sample D Male 13.2
Ventral pallidum
nTPM: 13.7
Samples: 4

Max nTPM: 15.8
Min nTPM: 10.3
Sample A Female 10.3
Sample B Female 13.5
Sample C Male 15.8
Sample D Male 15.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 18.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 18.5
Samples: 4

Max nTPM: 24.0
Min nTPM: 13.8
Sample A Male 15.3
Sample B Male 13.8
Sample C Female 20.8
Sample D Female 24.0
Septum
nTPM: 18.2
Samples: 4

Max nTPM: 20.6
Min nTPM: 16.7
Sample A Male 18.4
Sample B Male 17.0
Sample C Female 20.6
Sample D Female 16.7
Ventral forebrain
nTPM: 12.7
Samples: 4

Max nTPM: 14.0
Min nTPM: 11.7
Sample A Male 11.7
Sample B Male 12.2
Sample C Female 12.9
Sample D Female 14.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
78534506 Antisense, RP_070620_01_A12, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.1
78534506 Antisense, RP_070620_01_A12, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

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