MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:43.1 nTPM
HPA:43.1 nTPM
GTEx:27.8 nTPM
FANTOM5:99.8 Scaled Tags Per Million
Pig:20.4 nTPM
Mouse:2.3 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.1
2019 Male, age 18, unknown 43.8
2586 Male, age 75, left hemisphere 41.1
1830 Male, age 51, unknown 39.5
1833 Male, age 53, unknown 39.2
2411 Female, age 72, unknown 37.4
2828 Female, age 72, unknown 36.5
1870 Female, age 42, unknown 33.4
2666 Male, age 74, left hemisphere 32.5
2219 Male, age 76, both hemispheres 30.6
1827 Male, age 72, unknown 26.7
Dorsal raphe nucleus
nTPM: 24.6
2750 Male, age 76, both hemispheres 36.4
1828 Male, age 53, unknown 25.9
2016 Female, age 72, unknown 23.8
2047 Male, age 72, unknown 19.9
2298 Female, age 72, unknown 17.1
Inferior colliculus
nTPM: 25.0
1890 Male, age 53, unknown 27.9
2849 Male, age 72, unknown 25.9
1848 Female, age 42, unknown 24.5
2097 Female, age 72, unknown 21.8
Median raphe nucleus
nTPM: 23.0
2220 Male, age 76, midline 23.0
Pedunculopontine tegmental nucleus
nTPM: 27.3
2334 Male, age 80, both hemispheres 29.7
1921 Female, age 85, both hemispheres 28.9
2338 Male, age 61, both hemispheres 23.2
Periaquaductal grey, anterior
nTPM: 25.3
2502 Female, age 75, unknown 30.6
1947 Male, age 18, unknown 23.0
1795 Male, age 51, unknown 22.2
Periaquaductal grey, dorsal
nTPM: 20.2
2464 Female, age 72, unknown 25.8
1831 Male, age 72, unknown 24.6
2850 Male, age 76, both hemispheres 15.2
1840 Male, age 53, unknown 15.0
Periaquaductal grey, lateral
nTPM: 20.2
2272 Male, age 74, both hemispheres 22.3
2053 Male, age 18, unknown 21.6
2140 Male, age 76, both hemispheres 16.8
Pretectal area
nTPM: 29.2
1815 Male, age 53, unknown 37.6
2007 Male, age 72, unknown 35.4
1817 Female, age 42, unknown 35.0
2407 Male, age 75, both hemispheres 33.3
1944 Female, age 72, unknown 31.3
2316 Male, age 76, right hemisphere 30.3
2667 Female, age 75, unknown 30.2
1816 Male, age 51, unknown 28.2
2825 Male, age 18, unknown 23.5
2273 Male, age 74, both hemispheres 18.8
2224 Female, age 72, unknown 17.5
Red nucleus
nTPM: 43.1
2785 Male, age 18, unknown 50.4
1904 Male, age 53, unknown 48.0
2769 Male, age 72, unknown 46.9
2823 Male, age 76, right hemisphere 45.8
1865 Male, age 51, unknown 45.7
2588 Male, age 74, left hemisphere 45.6
2227 Male, age 72, unknown 44.3
2503 Female, age 72, unknown 42.1
2584 Male, age 75, left hemisphere 41.8
1821 Female, age 72, unknown 39.7
1954 Female, age 42, unknown 37.2
2725 Female, age 75, unknown 29.5
Substantia nigra
nTPM: 26.6
2583 Male, age 75, right hemisphere 38.2
1889 Female, age 72, unknown 31.3
2590 Female, age 75, unknown 27.8
2409 Female, age 72, unknown 27.1
1851 Male, age 51, unknown 26.8
2665 Male, age 74, both hemispheres 25.4
2699 Male, age 18, unknown 24.6
1941 Male, age 53, unknown 23.8
1916 Female, age 42, unknown 22.8
2241 Male, age 72, unknown 18.7
Superior colliculus
nTPM: 32.6
1913 Female, age 42, unknown 40.9
1995 Male, age 72, unknown 39.0
1895 Male, age 76, right hemisphere 34.5
2668 Female, age 75, unknown 33.5
1839 Male, age 51, unknown 31.2
2087 Female, age 72, unknown 30.9
2587 Male, age 74, left hemisphere 29.6
2664 Male, age 75, both hemispheres 29.5
2261 Male, age 18, unknown 29.1
1796 Male, age 53, unknown 28.0
Ventral tegmental area
nTPM: 28.5
2410 Female, age 72, unknown 35.0
2223 Female, age 72, unknown 34.2
1942 Male, age 51, unknown 27.3
2218 Male, age 76, both hemispheres 26.7
1915 Female, age 42, unknown 24.2
2021 Male, age 53, unknown 23.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 27.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.8
Samples: 139

Max nTPM: 112.5
Min nTPM: 9.2
Std nTPM: 13.7
Median nTPM: 25.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 112.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 79.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 79.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 56.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 54.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 50.8
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 50.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 49.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 48.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 47.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 46.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 99.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 99.8
FF:10158-103A5 76 years, female 99.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.4
Pig sample Sample description nTPM
Midbrain
nTPM: 20.4
Samples: 4

Max nTPM: 28.7
Min nTPM: 14.0
Sample A Female 28.7
Sample B Female 14.0
Sample C Male 23.2
Sample D Male 15.8
Periaqueductal gray
nTPM: 12.7
Samples: 3

Max nTPM: 13.6
Min nTPM: 11.3
Sample B Female 13.3
Sample C Male 11.3
Sample D Male 13.6
Substantia nigra
nTPM: 16.4
Samples: 4

Max nTPM: 23.2
Min nTPM: 10.4
Sample A Female 15.3
Sample B Female 10.4
Sample C Male 16.7
Sample D Male 23.2
Superior colliculi
nTPM: 17.2
Samples: 4

Max nTPM: 21.0
Min nTPM: 11.5
Sample A Female 15.2
Sample B Female 11.5
Sample C Male 21.0
Sample D Male 20.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.3
Samples: 4

Max nTPM: 2.8
Min nTPM: 1.5
Sample A Male 2.8
Sample B Male 2.3
Sample C Female 1.5
Sample D Female 2.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
69262260 Antisense, RP_050301_02_A08, Mouse strain C57BL/6J (56 days, male) 0.6
72077480 Antisense, RP_051017_03_B04, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.