MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:85.6 nTPM
HPA:85.6 nTPM
GTEx:85.3 nTPM
FANTOM5:89.7 Scaled Tags Per Million
Pig:86.9 nTPM
Mouse:165.4 nTPM
Allen mouse:7.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 85.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 77.8
1870 Female, age 42, unknown 83.2
2411 Female, age 72, unknown 81.5
1833 Male, age 53, unknown 80.0
2019 Male, age 18, unknown 79.6
2828 Female, age 72, unknown 79.0
1827 Male, age 72, unknown 77.9
1830 Male, age 51, unknown 77.9
2219 Male, age 76, both hemispheres 75.7
2586 Male, age 75, left hemisphere 72.0
2666 Male, age 74, left hemisphere 71.2
Dorsal raphe nucleus
nTPM: 85.0
2298 Female, age 72, unknown 93.9
2016 Female, age 72, unknown 84.1
1828 Male, age 53, unknown 83.3
2047 Male, age 72, unknown 82.0
2750 Male, age 76, both hemispheres 81.6
Inferior colliculus
nTPM: 81.0
2097 Female, age 72, unknown 85.5
1848 Female, age 42, unknown 80.7
1890 Male, age 53, unknown 79.9
2849 Male, age 72, unknown 77.9
Median raphe nucleus
nTPM: 79.8
2220 Male, age 76, midline 79.8
Pedunculopontine tegmental nucleus
nTPM: 82.0
2338 Male, age 61, both hemispheres 83.2
2334 Male, age 80, both hemispheres 81.6
1921 Female, age 85, both hemispheres 81.1
Periaquaductal grey, anterior
nTPM: 79.7
2502 Female, age 75, unknown 80.6
1947 Male, age 18, unknown 80.0
1795 Male, age 51, unknown 78.5
Periaquaductal grey, dorsal
nTPM: 82.3
1840 Male, age 53, unknown 84.8
2850 Male, age 76, both hemispheres 82.8
1831 Male, age 72, unknown 81.2
2464 Female, age 72, unknown 80.5
Periaquaductal grey, lateral
nTPM: 85.6
2272 Male, age 74, both hemispheres 91.7
2053 Male, age 18, unknown 84.1
2140 Male, age 76, both hemispheres 81.0
Pretectal area
nTPM: 81.5
2273 Male, age 74, both hemispheres 96.8
2224 Female, age 72, unknown 85.9
2667 Female, age 75, unknown 82.3
1944 Female, age 72, unknown 80.6
1816 Male, age 51, unknown 80.3
2316 Male, age 76, right hemisphere 80.3
2825 Male, age 18, unknown 79.4
1817 Female, age 42, unknown 78.5
1815 Male, age 53, unknown 78.0
2407 Male, age 75, both hemispheres 77.6
2007 Male, age 72, unknown 76.7
Red nucleus
nTPM: 79.5
1821 Female, age 72, unknown 86.3
2823 Male, age 76, right hemisphere 81.6
2725 Female, age 75, unknown 81.5
1865 Male, age 51, unknown 80.4
2503 Female, age 72, unknown 80.4
1954 Female, age 42, unknown 80.3
2769 Male, age 72, unknown 80.2
2227 Male, age 72, unknown 79.5
1904 Male, age 53, unknown 79.2
2785 Male, age 18, unknown 78.5
2584 Male, age 75, left hemisphere 73.9
2588 Male, age 74, left hemisphere 72.7
Substantia nigra
nTPM: 81.0
2241 Male, age 72, unknown 86.6
1851 Male, age 51, unknown 83.2
2409 Female, age 72, unknown 81.8
2699 Male, age 18, unknown 81.7
1916 Female, age 42, unknown 81.5
1889 Female, age 72, unknown 80.9
1941 Male, age 53, unknown 80.8
2590 Female, age 75, unknown 80.3
2665 Male, age 74, both hemispheres 77.1
2583 Male, age 75, right hemisphere 75.7
Superior colliculus
nTPM: 80.2
2587 Male, age 74, left hemisphere 86.1
1995 Male, age 72, unknown 84.4
1913 Female, age 42, unknown 83.0
2261 Male, age 18, unknown 79.8
1796 Male, age 53, unknown 79.7
2087 Female, age 72, unknown 79.0
1895 Male, age 76, right hemisphere 78.8
1839 Male, age 51, unknown 78.6
2668 Female, age 75, unknown 76.4
2664 Male, age 75, both hemispheres 76.0
Ventral tegmental area
nTPM: 81.6
2223 Female, age 72, unknown 82.3
2410 Female, age 72, unknown 82.3
2021 Male, age 53, unknown 82.2
1915 Female, age 42, unknown 82.0
1942 Male, age 51, unknown 80.9
2218 Male, age 76, both hemispheres 80.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 85.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 85.3
Samples: 139

Max nTPM: 166.0
Min nTPM: 50.9
Std nTPM: 21.1
Median nTPM: 80.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 166.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 158.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 151.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 142.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 139.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 138.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 129.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 121.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 120.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 118.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 116.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 89.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 89.7
FF:10158-103A5 76 years, female 89.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 86.9
Pig sample Sample description nTPM
Midbrain
nTPM: 80.8
Samples: 4

Max nTPM: 90.3
Min nTPM: 73.5
Sample A Female 73.5
Sample B Female 90.3
Sample C Male 83.2
Sample D Male 76.2
Periaqueductal gray
nTPM: 64.4
Samples: 3

Max nTPM: 68.1
Min nTPM: 59.4
Sample B Female 65.7
Sample C Male 68.1
Sample D Male 59.4
Substantia nigra
nTPM: 80.1
Samples: 4

Max nTPM: 113.3
Min nTPM: 42.7
Sample A Female 113.3
Sample B Female 82.7
Sample C Male 81.7
Sample D Male 42.7
Superior colliculi
nTPM: 86.9
Samples: 4

Max nTPM: 99.5
Min nTPM: 74.5
Sample A Female 99.5
Sample B Female 78.4
Sample C Male 95.1
Sample D Male 74.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 165.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 165.4
Samples: 4

Max nTPM: 176.3
Min nTPM: 148.6
Sample A Male 164.7
Sample B Male 176.3
Sample C Female 148.6
Sample D Female 172.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.9
69672144 Antisense, RP_050428_03_B03, Mouse strain C57BL/6J (56 days, male) 7.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.