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General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene namei
Official gene symbol, which is typically a short form of the gene name, according to HGNC.
Cancer-related genes Disease related genes Human disease related genes Plasma proteins
Predicted locationi
All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.
Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.
Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).
The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.
Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.
Chromosome
13
Cytoband
q14.2
Chromosome location (bp)
48303744 - 48599436
Number of transcriptsi
Number of protein-coding transcripts from the gene as defined by Ensembl.
The Structure section provides predicted structures from the Alphafold protein structure database and available experimental structures from Protein Data Bank (PDB).
In the Structure drop-down menu all experimental structures from PDB are available for selection and display. The structures are displayed using the NGL Viewer and can be zoomed-in and rotated either manually or by checking the Autorotate box. The Color scheme can be selected to show the residue index, chain name or confidence score (as B-factors and pLDDT score for experimental and predicted structures, respectively). The positions for available antigen sequences in the structure are shown if Antigens is turned to ON, and the Variants slider can be used to show the positions of clinical and population variants.https://github.com/nglviewer/ngl
The protein browser displays the antigen location on the target protein(s) and the features of the target protein. The tabs at the top of the protein view section can be used to switch between the different splice variants to which an antigen has been mapped.
At the top of the view, the position of the antigen (identified by the corresponding HPA identifier) is shown as a green bar. A yellow triangle on the bar indicates a <100% sequence identity to the protein target.
Below the antigens, the maximum percent sequence identity of the protein to all other proteins from other human genes is displayed, using a sliding window of 10 aa residues (HsID 10) or 50 aa residues (HsID 50). The region with the lowest possible identity is always selected for antigen design, with a maximum identity of 60% allowed for designing a single-target antigen (read more).
The curve in blue displays the predicted antigenicity i.e. the tendency for different regions of the protein to generate an immune response, with peak regions being predicted to be more antigenic.The curve shows average values based on a sliding window approach using an in-house propensity scale. (read more).
If a signal peptide is predicted by a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius (turquoise) and/or transmembrane regions (orange) are predicted by MDM, these are displayed.
Low complexity regions are shown in yellow and InterPro regions in green. Common (purple) and unique (grey) regions between different splice variants of the gene are also displayed (read more), and at the bottom of the protein view is the protein scale.
RB1-201
RB1-207
RB1-208
RB1-209
PROTEIN INFORMATIONi
The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.
The ENSP identifier links to the Ensembl website protein summary, while the ENST identifier links to the Ensembl website transcript summary for the selected splice variant. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.
The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.
The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column. The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius) and the number of predicted transmembrane region(s) (according to MDM) are also reported.
MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins SCAMPI predicted membrane proteins THUMBUP predicted membrane proteins SPOCTOPUS predicted secreted proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Plasma proteins Cancer-related genes Candidate cancer biomarkers Mutated cancer genes Mutational cancer driver genes COSMIC somatic mutations in cancer genes COSMIC Splicing Mutations COSMIC Somatic Mutations COSMIC Nonsense Mutations COSMIC Missense Mutations COSMIC Large Deletions COSMIC Germline Mutations COSMIC Frameshift Mutations Disease related genes Human disease related genes Cancers Cancers of the digestive system Cancers of the lung and pleura Cancers of soft tissues and bone Cancers of the urinary system Cancers of eye, brain, and central nervous system Cancers of haematopoietic and lymphoid tissues Mapped to neXtProt neXtProt - Evidence at protein level Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014)
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GO:0000082 [G1/S transition of mitotic cell cycle] GO:0000122 [negative regulation of transcription by RNA polymerase II] GO:0000785 [chromatin] GO:0000977 [RNA polymerase II transcription regulatory region sequence-specific DNA binding] GO:0001102 [RNA polymerase II activating transcription factor binding] GO:0001558 [regulation of cell growth] GO:0001894 [tissue homeostasis] GO:0003180 [aortic valve morphogenesis] GO:0003677 [DNA binding] GO:0003714 [transcription corepressor activity] GO:0005515 [protein binding] GO:0005634 [nucleus] GO:0005654 [nucleoplasm] GO:0005667 [transcription regulator complex] GO:0005819 [spindle] GO:0006325 [chromatin organization] GO:0006338 [chromatin remodeling] GO:0006355 [regulation of transcription, DNA-templated] GO:0006357 [regulation of transcription by RNA polymerase II] GO:0006469 [negative regulation of protein kinase activity] GO:0006915 [apoptotic process] GO:0007049 [cell cycle] GO:0007050 [cell cycle arrest] GO:0007265 [Ras protein signal transduction] GO:0007346 [regulation of mitotic cell cycle] GO:0008024 [cyclin/CDK positive transcription elongation factor complex] GO:0008134 [transcription factor binding] GO:0008285 [negative regulation of cell population proliferation] GO:0010629 [negative regulation of gene expression] GO:0016032 [viral process] GO:0016514 [SWI/SNF complex] GO:0016605 [PML body] GO:0019899 [enzyme binding] GO:0019900 [kinase binding] GO:0030154 [cell differentiation] GO:0030182 [neuron differentiation] GO:0030308 [negative regulation of cell growth] GO:0031134 [sister chromatid biorientation] GO:0031175 [neuron projection development] GO:0031625 [ubiquitin protein ligase binding] GO:0034088 [maintenance of mitotic sister chromatid cohesion] GO:0034349 [glial cell apoptotic process] GO:0035189 [Rb-E2F complex] GO:0035914 [skeletal muscle cell differentiation] GO:0042551 [neuron maturation] GO:0042802 [identical protein binding] GO:0043353 [enucleate erythrocyte differentiation] GO:0043433 [negative regulation of DNA-binding transcription factor activity] GO:0043550 [regulation of lipid kinase activity] GO:0045445 [myoblast differentiation] GO:0045651 [positive regulation of macrophage differentiation] GO:0045786 [negative regulation of cell cycle] GO:0045842 [positive regulation of mitotic metaphase/anaphase transition] GO:0045879 [negative regulation of smoothened signaling pathway] GO:0045892 [negative regulation of transcription, DNA-templated] GO:0045930 [negative regulation of mitotic cell cycle] GO:0045944 [positive regulation of transcription by RNA polymerase II] GO:0048565 [digestive tract development] GO:0048667 [cell morphogenesis involved in neuron differentiation] GO:0050680 [negative regulation of epithelial cell proliferation] GO:0050728 [negative regulation of inflammatory response] GO:0051146 [striated muscle cell differentiation] GO:0051219 [phosphoprotein binding] GO:0051301 [cell division] GO:0051402 [neuron apoptotic process] GO:0051726 [regulation of cell cycle] GO:0061676 [importin-alpha family protein binding] GO:0071459 [protein localization to chromosome, centromeric region] GO:0071466 [cellular response to xenobiotic stimulus] GO:0071901 [negative regulation of protein serine/threonine kinase activity] GO:0071922 [regulation of cohesin loading] GO:0071930 [negative regulation of transcription involved in G1/S transition of mitotic cell cycle] GO:0090230 [regulation of centromere complex assembly] GO:0097284 [hepatocyte apoptotic process] GO:0097718 [disordered domain specific binding] GO:0120163 [negative regulation of cold-induced thermogenesis] GO:1902948 [negative regulation of tau-protein kinase activity] GO:1903055 [positive regulation of extracellular matrix organization] GO:1904028 [positive regulation of collagen fibril organization] GO:1904761 [negative regulation of myofibroblast differentiation] GO:2000134 [negative regulation of G1/S transition of mitotic cell cycle] GO:2000679 [positive regulation of transcription regulatory region DNA binding] GO:2001234 [negative regulation of apoptotic signaling pathway]
A0A2R8Y743 [Direct mapping] Retinoblastoma-associated protein
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Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Cancer-related genes Mutated cancer genes Mutational cancer driver genes COSMIC somatic mutations in cancer genes COSMIC Splicing Mutations COSMIC Somatic Mutations COSMIC Nonsense Mutations COSMIC Missense Mutations COSMIC Large Deletions COSMIC Germline Mutations COSMIC Frameshift Mutations Human disease related genes Cancers Cancers of the digestive system Cancers of the lung and pleura Cancers of soft tissues and bone Cancers of the urinary system Cancers of eye, brain, and central nervous system Cancers of haematopoietic and lymphoid tissues Protein evidence (Ezkurdia et al 2014)
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GO:0005634 [nucleus] GO:0006357 [regulation of transcription by RNA polymerase II] GO:0006915 [apoptotic process] GO:0008134 [transcription factor binding] GO:0008285 [negative regulation of cell population proliferation] GO:0035189 [Rb-E2F complex] GO:0045892 [negative regulation of transcription, DNA-templated] GO:0051726 [regulation of cell cycle] GO:2000134 [negative regulation of G1/S transition of mitotic cell cycle]
A0A2R8YFL6 [Direct mapping] Retinoblastoma-associated protein
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SPOCTOPUS predicted secreted proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Cancer-related genes Mutated cancer genes Mutational cancer driver genes COSMIC somatic mutations in cancer genes COSMIC Splicing Mutations COSMIC Somatic Mutations COSMIC Nonsense Mutations COSMIC Missense Mutations COSMIC Large Deletions COSMIC Germline Mutations COSMIC Frameshift Mutations Human disease related genes Cancers Cancers of the digestive system Cancers of the lung and pleura Cancers of soft tissues and bone Cancers of the urinary system Cancers of eye, brain, and central nervous system Cancers of haematopoietic and lymphoid tissues Protein evidence (Ezkurdia et al 2014)
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GO:0006357 [regulation of transcription by RNA polymerase II] GO:0006915 [apoptotic process] GO:0008134 [transcription factor binding] GO:0008285 [negative regulation of cell population proliferation] GO:0035189 [Rb-E2F complex] GO:0045892 [negative regulation of transcription, DNA-templated] GO:0051726 [regulation of cell cycle] GO:2000134 [negative regulation of G1/S transition of mitotic cell cycle]
A0A3B3IS71 [Direct mapping] Retinoblastoma-associated protein
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MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins SCAMPI predicted membrane proteins THUMBUP predicted membrane proteins SPOCTOPUS predicted secreted proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Cancer-related genes Mutated cancer genes Mutational cancer driver genes COSMIC somatic mutations in cancer genes COSMIC Splicing Mutations COSMIC Somatic Mutations COSMIC Nonsense Mutations COSMIC Missense Mutations COSMIC Large Deletions COSMIC Germline Mutations COSMIC Frameshift Mutations Human disease related genes Cancers Cancers of the digestive system Cancers of the lung and pleura Cancers of soft tissues and bone Cancers of the urinary system Cancers of eye, brain, and central nervous system Cancers of haematopoietic and lymphoid tissues Protein evidence (Ezkurdia et al 2014)
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GO:0005634 [nucleus] GO:0006357 [regulation of transcription by RNA polymerase II] GO:0006915 [apoptotic process] GO:0007049 [cell cycle] GO:0008134 [transcription factor binding] GO:0008285 [negative regulation of cell population proliferation] GO:0035189 [Rb-E2F complex] GO:0045892 [negative regulation of transcription, DNA-templated] GO:0051726 [regulation of cell cycle] GO:2000134 [negative regulation of G1/S transition of mitotic cell cycle]
The Human Protein Atlas project is funded
