BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:7.8 nTPM
HPA:7.8 nTPM
GTEx:3.8 nTPM
FANTOM5:11.4 Scaled Tags Per Million
Pig:4.1 nTPM
Mouse:14.3 nTPM

CAUDATE - Antibody stainingi
Antibody HPA053182
Glial cells Low
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 7.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.0
2288 Male, age 75, left hemisphere 7.3
2481 Female, age 94, left hemisphere 6.8
2846 Female, age 79, unknown 6.2
1781 Male, age 74, unknown 5.0
2289 Male, age 61, right hemisphere 4.1
2290 Female, age 72, unknown 4.0
1854 Male, age 80, left hemisphere 3.2
1857 Female, age 85, left hemisphere 3.0
Claustrum
nTPM: 3.7
2491 Male, age 75, both hemispheres 4.9
2392 Female, age 94, both hemispheres 4.7
1956 Male, age 74, unknown 3.9
2196 Female, age 79, unknown 3.7
2568 Male, age 61, both hemispheres 3.5
2198 Male, age 80, both hemispheres 3.4
2284 Female, age 91, both hemispheres 3.4
2292 Female, age 85, both hemispheres 3.0
2645 Female, age 72, unknown 2.7
Globus pallidus, externus
nTPM: 7.8
1996 Male, age 80, right hemisphere 9.1
2646 Male, age 61, right hemisphere 8.8
2567 Female, age 72, unknown 7.4
2772 Female, age 79, unknown 6.9
2395 Male, age 75, both hemispheres 6.7
Globus pallidus, internus
nTPM: 7.7
2287 Male, age 75, right hemisphere 9.1
2778 Female, age 91, both hemispheres 8.2
2111 Female, age 85, right hemisphere 7.6
1818 Male, age 74, unknown 7.4
2483 Female, age 94, right hemisphere 7.4
2566 Female, age 72, unknown 7.2
2037 Male, age 80, right hemisphere 6.8
Nucleus accumbens
nTPM: 4.5
2732 Male, age 80, right hemisphere 6.7
2391 Female, age 94, left hemisphere 6.0
2286 Male, age 75, left hemisphere 5.5
2698 Female, age 72, unknown 5.1
1783 Male, age 74, unknown 3.2
1806 Female, age 85, left hemisphere 3.1
1856 Female, age 91, right hemisphere 3.1
2824 Male, age 61, right hemisphere 3.1
Nucleus basalis of Meynert
nTPM: 6.8
2569 Male, age 61, both hemispheres 10.3
2484 Female, age 94, left hemisphere 6.3
2393 Male, age 80, right hemisphere 5.4
2821 Male, age 75, both hemispheres 5.4
Nucleus of the diagonal band
nTPM: 4.5
1979 Male, age 74, unknown 7.9
1812 Female, age 91, both hemispheres 4.5
2195 Female, age 85, both hemispheres 3.9
2775 Male, age 80, right hemisphere 3.1
2029 Male, age 61, right hemisphere 2.8
Olfactory tubercle
nTPM: 3.7
1846 Male, age 80, right hemisphere 4.3
2856 Male, age 75, right hemisphere 3.9
1998 Female, age 91, both hemispheres 3.3
2487 Female, age 94, left hemisphere 3.3
Putamen
nTPM: 6.1
2647 Male, age 75, left hemisphere 8.5
2489 Female, age 72, unknown 7.5
1829 Male, age 74, unknown 7.4
2466 Female, age 79, unknown 6.9
2482 Female, age 94, left hemisphere 6.4
1838 Male, age 80, right hemisphere 3.2
1937 Female, age 91, right hemisphere 3.1
Septal nuclei
nTPM: 5.4
2199 Male, age 80, right hemisphere 11.1
2394 Male, age 61, left hemisphere 6.1
2009 Female, age 91, both hemispheres 5.4
2629 Female, age 94, right hemisphere 5.1
2059 Female, age 85, both hemispheres 4.7
2031 Female, age 72, unknown 2.7
1960 Male, age 74, unknown 2.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 3.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3.5
Samples: 246

Max nTPM: 6.8
Min nTPM: 1.3
Std nTPM: 0.9
Median nTPM: 3.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 6.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 6.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 6.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 5.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 5.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 5.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 5.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 5.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 5.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 5.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 5.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 2.8
Samples: 246

Max nTPM: 6.3
Min nTPM: 0.8
Std nTPM: 1.0
Median nTPM: 2.6
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 6.3
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 6.1
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 5.7
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 5.6
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 5.5
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 5.4
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 5.3
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 5.3
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 5.1
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 5.1
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 5.0
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Brain - Putamen (basal ganglia)
Average nTPM: 3.8
Samples: 205

Max nTPM: 7.9
Min nTPM: 1.8
Std nTPM: 1.0
Median nTPM: 3.6
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 7.9
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 7.2
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 6.8
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 6.5
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 6.4
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 6.3
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 6.1
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 6.0
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 5.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 5.8
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 5.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 11.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 10.1
FF:10164-103B2 76 years, female 10.1
Globus pallidus
Scaled Tags Per Million: 11.3
FF:10161-103A8 76 years, female 12.4
FF:10175-103C4 60 years, female 10.2
Nucleus accumbens
Scaled Tags Per Million: 11.4
FF:10037-101F1 23-56 years, mixed 11.4
Putamen
Scaled Tags Per Million: 7.1
FF:10176-103C5 60 years, female 7.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 4.1
Pig sample Sample description nTPM
Caudate
nTPM: 3.0
Samples: 4

Max nTPM: 3.2
Min nTPM: 2.6
Sample A Female 3.2
Sample B Female 3.0
Sample C Male 3.2
Sample D Male 2.6
Putamen
nTPM: 3.3
Samples: 4

Max nTPM: 4.5
Min nTPM: 2.1
Sample A Female 4.5
Sample B Female 2.1
Sample C Male 3.5
Sample D Male 3.2
Septum
nTPM: 4.1
Samples: 4

Max nTPM: 5.9
Min nTPM: 2.7
Sample A Female 3.5
Sample B Female 2.7
Sample C Male 5.9
Sample D Male 4.3
Ventral pallidum
nTPM: 3.7
Samples: 4

Max nTPM: 5.1
Min nTPM: 2.1
Sample A Female 2.1
Sample B Female 4.6
Sample C Male 5.1
Sample D Male 2.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 14.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 14.3
Samples: 4

Max nTPM: 15.5
Min nTPM: 12.8
Sample A Male 14.7
Sample B Male 12.8
Sample C Female 14.2
Sample D Female 15.5
Septum
nTPM: 10.4
Samples: 4

Max nTPM: 11.5
Min nTPM: 9.2
Sample A Male 9.2
Sample B Male 11.5
Sample C Female 9.7
Sample D Female 11.2
Ventral forebrain
nTPM: 11.1
Samples: 4

Max nTPM: 11.9
Min nTPM: 10.4
Sample A Male 11.2
Sample B Male 10.8
Sample C Female 11.9
Sample D Female 10.4

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