BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:6.0 nTPM
HPA:6.0 nTPM
GTEx:10.2 nTPM
FANTOM5:9.0 Scaled Tags Per Million
Pig:31.9 nTPM
Mouse:3.2 nTPM

CAUDATE - Antibody stainingi
Antibody HPA001603
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 6.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.2
2289 Male, age 61, right hemisphere 6.0
1854 Male, age 80, left hemisphere 5.9
2481 Female, age 94, left hemisphere 5.7
1781 Male, age 74, unknown 5.2
1857 Female, age 85, left hemisphere 5.1
2290 Female, age 72, unknown 5.0
2846 Female, age 79, unknown 4.5
2288 Male, age 75, left hemisphere 4.2
Claustrum
nTPM: 5.0
2198 Male, age 80, both hemispheres 5.4
2284 Female, age 91, both hemispheres 5.3
2491 Male, age 75, both hemispheres 5.2
2645 Female, age 72, unknown 5.2
2196 Female, age 79, unknown 4.9
1956 Male, age 74, unknown 4.8
2292 Female, age 85, both hemispheres 4.8
2392 Female, age 94, both hemispheres 4.7
2568 Male, age 61, both hemispheres 4.5
Globus pallidus, externus
nTPM: 5.7
1996 Male, age 80, right hemisphere 6.6
2646 Male, age 61, right hemisphere 5.6
2772 Female, age 79, unknown 5.6
2567 Female, age 72, unknown 5.5
2395 Male, age 75, both hemispheres 5.4
Globus pallidus, internus
nTPM: 5.5
2037 Male, age 80, right hemisphere 6.2
2287 Male, age 75, right hemisphere 5.6
1818 Male, age 74, unknown 5.5
2111 Female, age 85, right hemisphere 5.4
2566 Female, age 72, unknown 5.3
2778 Female, age 91, both hemispheres 5.2
2483 Female, age 94, right hemisphere 5.1
Nucleus accumbens
nTPM: 5.2
2732 Male, age 80, right hemisphere 7.7
1806 Female, age 85, left hemisphere 5.3
1856 Female, age 91, right hemisphere 5.2
2698 Female, age 72, unknown 5.1
1783 Male, age 74, unknown 4.9
2391 Female, age 94, left hemisphere 4.5
2286 Male, age 75, left hemisphere 4.4
2824 Male, age 61, right hemisphere 4.4
Nucleus basalis of Meynert
nTPM: 5.2
2569 Male, age 61, both hemispheres 5.8
2393 Male, age 80, right hemisphere 5.7
2484 Female, age 94, left hemisphere 4.6
2821 Male, age 75, both hemispheres 4.5
Nucleus of the diagonal band
nTPM: 5.7
1812 Female, age 91, both hemispheres 6.1
1979 Male, age 74, unknown 6.1
2775 Male, age 80, right hemisphere 5.7
2195 Female, age 85, both hemispheres 5.3
2029 Male, age 61, right hemisphere 5.1
Olfactory tubercle
nTPM: 5.4
1846 Male, age 80, right hemisphere 5.7
2856 Male, age 75, right hemisphere 5.7
1998 Female, age 91, both hemispheres 5.2
2487 Female, age 94, left hemisphere 5.1
Putamen
nTPM: 4.9
2489 Female, age 72, unknown 5.2
1838 Male, age 80, right hemisphere 5.1
2647 Male, age 75, left hemisphere 5.0
1829 Male, age 74, unknown 4.9
1937 Female, age 91, right hemisphere 4.7
2466 Female, age 79, unknown 4.6
2482 Female, age 94, left hemisphere 4.6
Septal nuclei
nTPM: 6.0
2199 Male, age 80, right hemisphere 6.8
2059 Female, age 85, both hemispheres 6.1
2009 Female, age 91, both hemispheres 6.0
1960 Male, age 74, unknown 5.9
2629 Female, age 94, right hemisphere 5.9
2394 Male, age 61, left hemisphere 5.7
2031 Female, age 72, unknown 5.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 10.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 8.9
Samples: 246

Max nTPM: 35.0
Min nTPM: 1.4
Std nTPM: 6.0
Median nTPM: 7.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 35.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 33.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 33.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 31.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 30.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 28.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 23.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 23.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 22.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 22.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 21.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 10.2
Samples: 246

Max nTPM: 42.4
Min nTPM: 1.1
Std nTPM: 6.8
Median nTPM: 8.4
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 42.4
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 40.5
GTEX-ZE9C-0011-R6a-SM-4WWCW 60-69 years, male 38.1
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 32.4
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 32.2
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 32.2
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 30.8
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 30.5
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 30.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 30.4
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 29.7
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Brain - Putamen (basal ganglia)
Average nTPM: 6.9
Samples: 205

Max nTPM: 37.3
Min nTPM: 0.2
Std nTPM: 5.6
Median nTPM: 5.4
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 37.3
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 31.8
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 30.0
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 22.9
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 22.3
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 20.6
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 20.6
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 20.1
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 19.7
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 18.9
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 18.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 9.0
FF:10164-103B2 76 years, female 9.0
Globus pallidus
Scaled Tags Per Million: 3.8
FF:10161-103A8 76 years, female 6.1
FF:10175-103C4 60 years, female 1.5
Nucleus accumbens
Scaled Tags Per Million: 3.8
FF:10037-101F1 23-56 years, mixed 3.8
Putamen
Scaled Tags Per Million: 4.0
FF:10176-103C5 60 years, female 4.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 31.9
Pig sample Sample description nTPM
Caudate
nTPM: 31.9
Samples: 4

Max nTPM: 41.7
Min nTPM: 25.1
Sample A Female 25.1
Sample B Female 30.0
Sample C Male 41.7
Sample D Male 30.8
Putamen
nTPM: 22.8
Samples: 4

Max nTPM: 32.7
Min nTPM: 8.8
Sample A Female 8.8
Sample B Female 21.6
Sample C Male 32.7
Sample D Male 28.2
Septum
nTPM: 13.5
Samples: 4

Max nTPM: 24.4
Min nTPM: 4.1
Sample A Female 24.4
Sample B Female 19.4
Sample C Male 4.1
Sample D Male 6.1
Ventral pallidum
nTPM: 19.5
Samples: 4

Max nTPM: 29.5
Min nTPM: 6.3
Sample A Female 29.5
Sample B Female 23.4
Sample C Male 6.3
Sample D Male 18.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 3.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.6
Samples: 4

Max nTPM: 1.8
Min nTPM: 1.1
Sample A Male 1.7
Sample B Male 1.7
Sample C Female 1.1
Sample D Female 1.8
Septum
nTPM: 3.2
Samples: 4

Max nTPM: 4.7
Min nTPM: 1.7
Sample A Male 4.7
Sample B Male 2.6
Sample C Female 1.7
Sample D Female 3.8
Ventral forebrain
nTPM: 2.8
Samples: 4

Max nTPM: 4.0
Min nTPM: 1.9
Sample A Male 4.0
Sample B Male 2.6
Sample C Female 2.5
Sample D Female 1.9

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